Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, vacuole
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- endoplasmic reticulum 3
- extracellular 2
- vacuole 3
- plasma membrane 2
- golgi 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G052900.1 | Wheat | golgi | 98.49 | 98.49 |
| Zm00001d033818_P002 | Maize | extracellular | 86.93 | 86.93 |
| EER90966 | Sorghum | endoplasmic reticulum, plastid, vacuole | 87.94 | 86.21 |
| Zm00001d013397_P001 | Maize | plastid | 85.93 | 85.07 |
| Os03t0721400-01 | Rice | plasma membrane | 87.94 | 83.73 |
| KRG94771 | Soybean | endoplasmic reticulum | 62.81 | 66.14 |
| KRH06758 | Soybean | plasma membrane | 63.32 | 65.97 |
| VIT_08s0007g06790.t01 | Wine grape | plasma membrane | 63.32 | 65.28 |
| AT5G06660.1 | Thale cress | plasma membrane | 62.81 | 63.78 |
| CDY47899 | Canola | plasma membrane | 62.31 | 63.59 |
| Bra038695.1-P | Field mustard | plasma membrane | 62.31 | 63.59 |
| AT3G12030.1 | Thale cress | plasma membrane | 62.31 | 63.27 |
| PGSC0003DMT400029800 | Potato | plasma membrane | 60.8 | 62.37 |
| Solyc10g079000.1.1 | Tomato | nucleus | 60.8 | 62.37 |
| KXG25953 | Sorghum | plastid | 44.22 | 58.67 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, extracellular | 28.64 | 47.11 |
| KRH46963 | Soybean | plastid | 24.12 | 43.24 |
Protein Annotations
| MapMan:35.2 | ncoils:Coil | InterPro:EMC3/TMCO1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005262 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0019725 | GO:GO:0030176 | GO:GO:0032469 |
| PFAM:PF01956 | PIRSF:PIRSF023322 | PANTHER:PTHR20917 | SMART:SM01415 | InterPro:TMCO1 | TMHMM:TMhelix |
| EnsemblPlantsGene:TraesCS4B01G052700 | EnsemblPlants:TraesCS4B01G052700.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4B:-:41556005..41556604
Molecular Weight (calculated)
20924.5 Da
IEP (calculated)
10.595
GRAVY (calculated)
0.205
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MASALSSLRY GDSLSVVAIS GATAVLCEAI SWLLIYRTAT YNSLRASIER HSRKLDSMKS ISSGAGGAAP SSQPASSRAK KMDRVESSLK DASRELSLAK
101: LKSGAVVAAV LFVVFGLLNS LFEGRAVAKL PFAPVPLVQR MSHRGLPGND PTDCAMVFLY FLCSMSIRTN LQKLLGFTPP RAAAGAGGGL FAMPDPKAN
101: LKSGAVVAAV LFVVFGLLNS LFEGRAVAKL PFAPVPLVQR MSHRGLPGND PTDCAMVFLY FLCSMSIRTN LQKLLGFTPP RAAAGAGGGL FAMPDPKAN
001: MATAIPLFAS FKYADSLTVV GISFCTALVC EAISWILIYR TSSYKSLKSS IDKASKKLET MKTDNPSSKL TNKKSKTKKI DRVESSLKES SRDLSLFKFK
101: SGAVVALVLF VVFGLLNSLF EGKVVAKLPF HPITIVRKMS HRGLKGDDST DCSMAFLYLL CSISIRTNLQ KFLGFSPPRG AAGAGGLFPM PDPKTN
101: SGAVVALVLF VVFGLLNSLF EGKVVAKLPF HPITIVRKMS HRGLKGDDST DCSMAFLYLL CSISIRTNLQ KFLGFSPPRG AAGAGGLFPM PDPKTN
Arabidopsis Description
Calcium load-activated calcium channel [Source:UniProtKB/TrEMBL;Acc:Q9FG04]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.