Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G06660.1 | Thale cress | plasma membrane | 50.41 | 31.12 |
| VIT_08s0007g06790.t01 | Wine grape | plasma membrane | 49.59 | 31.09 |
| Solyc10g079000.1.1 | Tomato | nucleus | 47.11 | 29.38 |
| PGSC0003DMT400029800 | Potato | plasma membrane | 47.11 | 29.38 |
| Zm00001d033818_P002 | Maize | extracellular | 47.93 | 29.15 |
| AT3G12030.1 | Thale cress | plasma membrane | 47.11 | 29.08 |
| CDY47899 | Canola | plasma membrane | 46.28 | 28.72 |
| Bra038695.1-P | Field mustard | plasma membrane | 46.28 | 28.72 |
| TraesCS4B01G052700.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 47.11 | 28.64 |
| TraesCS4D01G052900.1 | Wheat | golgi | 47.11 | 28.64 |
| KRG94771 | Soybean | endoplasmic reticulum | 44.63 | 28.57 |
| EER90966 | Sorghum | endoplasmic reticulum, plastid, vacuole | 47.93 | 28.57 |
| Zm00001d013397_P001 | Maize | plastid | 47.11 | 28.36 |
| KRH06758 | Soybean | plasma membrane | 44.63 | 28.27 |
| Os03t0721400-01 | Rice | plasma membrane | 45.45 | 26.32 |
| KRH46963 | Soybean | plastid | 12.4 | 13.51 |
| KXG25953 | Sorghum | plastid | 12.4 | 10.0 |
Protein Annotations
| MapMan:35.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005262 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019725 | GO:GO:0030176 | GO:GO:0032469 |
| GO:GO:0070588 | EnsemblPlantsGene:GSMUA_Achr10G17720_001 | EnsemblPlants:GSMUA_Achr10P17720_001 | EnsemblPlants:GSMUA_Achr10T17720_001 | UniProt:M0RJ47 | PANTHER:PTHR20917 |
| InterPro:TMCO1 | TMHMM:TMhelix | UniParc:UPI0002959157 | SEG:seg | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G17720_001]
Coordinates
chr10:+:24802886..24807114
Molecular Weight (calculated)
12936.4 Da
IEP (calculated)
10.350
GRAVY (calculated)
-0.064
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASSALSSF RYADSLVVVG ISVCTAFLCE AISWLLIYRT STYKSLRSSI DKASKKLDTM KSTSASSSSK KPSSSSSLSS SSSSSWVLRP QEARPVPDSS
101: RCPIPKLADC LIRRLSLSSN S
101: RCPIPKLADC LIRRLSLSSN S
001: MATAIPLFAS FKYADSLTVV GISFCTALVC EAISWILIYR TSSYKSLKSS IDKASKKLET MKTDNPSSKL TNKKSKTKKI DRVESSLKES SRDLSLFKFK
101: SGAVVALVLF VVFGLLNSLF EGKVVAKLPF HPITIVRKMS HRGLKGDDST DCSMAFLYLL CSISIRTNLQ KFLGFSPPRG AAGAGGLFPM PDPKTN
101: SGAVVALVLF VVFGLLNSLF EGKVVAKLPF HPITIVRKMS HRGLKGDDST DCSMAFLYLL CSISIRTNLQ KFLGFSPPRG AAGAGGLFPM PDPKTN
Arabidopsis Description
Calcium load-activated calcium channel [Source:UniProtKB/TrEMBL;Acc:Q9FG04]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.