Factsheet for Zm00001d013397_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 1
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90966	Sorghum	endoplasmic reticulum, plastid, vacuole	96.52	95.57
Zm00001d033818_P002	Maize	extracellular	94.53	95.48
TraesCS4B01G052700.1	Wheat	endoplasmic reticulum, plastid, vacuole	85.07	85.93
TraesCS4D01G052900.1	Wheat	golgi	85.07	85.93
Os03t0721400-01	Rice	plasma membrane	86.57	83.25
VIT_08s0007g06790.t01	Wine grape	plasma membrane	64.68	67.36
KRG94771	Soybean	endoplasmic reticulum	62.69	66.67
KRH06758	Soybean	plasma membrane	63.18	66.49
Bra038695.1-P	Field mustard	plasma membrane	62.19	64.1
CDY47899	Canola	plasma membrane	62.19	64.1
PGSC0003DMT400029800	Potato	plasma membrane	61.69	63.92
Solyc10g079000.1.1	Tomato	nucleus	61.69	63.92
AT3G12030.1	Thale cress	plasma membrane	62.19	63.78
AT5G06660.1	Thale cress	plasma membrane	61.69	63.27
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	28.36	47.11
KRH46963	Soybean	plastid	23.88	43.24

Protein Annotations

EntrezGene:100283298	MapMan:35.2	ProteinID:AQK63341.1	ProteinID:AQK63342.1	UniProt:B6TGS2	ncoils:Coil
InterPro:EMC3/TMCO1	EMBL:EU964187	EMBL:EU974296	GO:GO:0003674	GO:GO:0005215	GO:GO:0005262
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006810
GO:GO:0006811	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725
GO:GO:0030176	GO:GO:0032469	GO:GO:0070588	PFAM:PF01956	PIRSF:PIRSF023322	PANTHER:PTHR20917
SMART:SM01415	InterPro:TMCO1	TMHMM:TMhelix	UniParc:UPI000182E52F	EnsemblPlantsGene:Zm00001d013397	EnsemblPlants:Zm00001d013397_P001
EnsemblPlants:Zm00001d013397_T001	SEG:seg	:	:	:	:

Description

Fb27

Coordinates

chr5:+:10347220..10350970

Molecular Weight (calculated)

21263.0 Da

IEP (calculated)

10.595

GRAVY (calculated)

0.193

Length

201 amino acids

Sequence
(BLAST)

001: MASALSSLRY GDSLSVVGIS AATAVLCEAM SWLLIYRTAT YNSLRASIER HSRKLDAMKS GSTSASSGTA ASSAQPASSR AKKMDRVETS LKDAARELSL
101: AKLKSGAVVA VMLFVVFGLL NSLFEGRTVA KLPFAPIPLV QRMSHRGLPG NDPTDCSMVF LYFLCSMSIR TNLQKLLGFA PPRAAAAAGG GLFPMPDPKV
201: N

Best Arabidopsis Sequence Match ( AT5G06660.1 )
(BLAST)

001: MATAIPLFAS FKYADSLTVV GISFCTALVC EAISWILIYR TSSYKSLKSS IDKASKKLET MKTDNPSSKL TNKKSKTKKI DRVESSLKES SRDLSLFKFK
101: SGAVVALVLF VVFGLLNSLF EGKVVAKLPF HPITIVRKMS HRGLKGDDST DCSMAFLYLL CSISIRTNLQ KFLGFSPPRG AAGAGGLFPM PDPKTN

Arabidopsis Description

Calcium load-activated calcium channel [Source:UniProtKB/TrEMBL;Acc:Q9FG04]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.