Factsheet for Zm00001d033818_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

mitochondrion 1
endoplasmic reticulum 3
extracellular 2
vacuole 3
plasma membrane 2
golgi 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plastid

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013397_P001	Maize	plastid	95.48	94.53
TraesCS4B01G052700.1	Wheat	endoplasmic reticulum, plastid, vacuole	86.93	86.93
TraesCS4D01G052900.1	Wheat	golgi	86.93	86.93
Os03t0721400-01	Rice	plasma membrane	87.94	83.73
VIT_08s0007g06790.t01	Wine grape	plasma membrane	65.83	67.88
KRG94771	Soybean	endoplasmic reticulum	64.32	67.72
KRH06758	Soybean	plasma membrane	64.32	67.02
Bra038695.1-P	Field mustard	plasma membrane	64.32	65.64
CDY47899	Canola	plasma membrane	64.32	65.64
AT3G12030.1	Thale cress	plasma membrane	63.82	64.8
PGSC0003DMT400029800	Potato	plasma membrane	62.81	64.43
Solyc10g079000.1.1	Tomato	nucleus	62.81	64.43
AT5G06660.1	Thale cress	plasma membrane	63.32	64.29
KXG25953	Sorghum	plastid	47.74	63.33
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	29.15	47.93
KRH46963	Soybean	plastid	24.12	43.24

Protein Annotations

EntrezGene:100382332	MapMan:35.2	EMBL:BT063949	UniProt:C0P6N0	ncoils:Coil	InterPro:EMC3/TMCO1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005262	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0030176	GO:GO:0032469	GO:GO:0070588
ProteinID:ONM08708.1	ProteinID:ONM08709.1	PFAM:PF01956	PIRSF:PIRSF023322	PANTHER:PTHR20917	SMART:SM01415
InterPro:TMCO1	TMHMM:TMhelix	UniParc:UPI0001948DFC	EnsemblPlantsGene:Zm00001d033818	EnsemblPlants:Zm00001d033818_P002	EnsemblPlants:Zm00001d033818_T002
SEG:seg	:	:	:	:	:

Description

Transmembrane and coiled-coil domains protein 1

Coordinates

chr1:-:274726910..274729148

Molecular Weight (calculated)

21028.6 Da

IEP (calculated)

10.461

GRAVY (calculated)

0.217

Length

199 amino acids

Sequence
(BLAST)

001: MASALSSLRY GDSLSVVGIS AATAVLCEAI SWLLIYRTAT YDSLRASIER HSRKLDAMKS GSNSSGAASS SAQAASSRAK KMDRVETSLK DAARELSLAK
101: LKSGAVVAAV LFVVFGLLNS LFEGRTVAKL PFAPIPLVQR MSHRGLPGND PTDCSMVFLY FLCSMSIRTN LQKLLGFAPP RAVAAAGGGL FPMPDPKVN

Best Arabidopsis Sequence Match ( AT5G06660.1 )
(BLAST)

001: MATAIPLFAS FKYADSLTVV GISFCTALVC EAISWILIYR TSSYKSLKSS IDKASKKLET MKTDNPSSKL TNKKSKTKKI DRVESSLKES SRDLSLFKFK
101: SGAVVALVLF VVFGLLNSLF EGKVVAKLPF HPITIVRKMS HRGLKGDDST DCSMAFLYLL CSISIRTNLQ KFLGFSPPRG AAGAGGLFPM PDPKTN

Arabidopsis Description

Calcium load-activated calcium channel [Source:UniProtKB/TrEMBL;Acc:Q9FG04]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.