Factsheet for VIT_08s0007g06790.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 5
golgi 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	peroxisome
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06758	Soybean	plasma membrane	80.31	81.15
KRG94771	Soybean	endoplasmic reticulum	79.27	80.95
Bra038695.1-P	Field mustard	plasma membrane	81.35	80.51
CDY47899	Canola	plasma membrane	81.35	80.51
Solyc10g079000.1.1	Tomato	nucleus	79.27	78.87
PGSC0003DMT400029800	Potato	plasma membrane	79.27	78.87
AT3G12030.1	Thale cress	plasma membrane	79.27	78.06
AT5G06660.1	Thale cress	plasma membrane	78.76	77.55
Zm00001d033818_P002	Maize	extracellular	67.88	65.83
EER90966	Sorghum	endoplasmic reticulum, plastid, vacuole	68.39	65.02
Zm00001d013397_P001	Maize	plastid	67.36	64.68
TraesCS4D01G052900.1	Wheat	golgi	65.8	63.82
TraesCS4B01G052700.1	Wheat	endoplasmic reticulum, plastid, vacuole	65.28	63.32
Os03t0721400-01	Rice	plasma membrane	66.84	61.72
KRH46963	Soybean	plastid	31.61	54.95
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	31.09	49.59
KXG25953	Sorghum	plastid	38.34	49.33

Protein Annotations

EntrezGene:100262250	wikigene:100262250	MapMan:35.2	ProteinID:CBI29992	ProteinID:CBI29992.3	UniProt:D7TIB6
InterPro:EMC3/TMCO1	EMBL:FN595991	GO:GO:0003674	GO:GO:0005215	GO:GO:0005262	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006810	GO:GO:0006811
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0030176
GO:GO:0032469	GO:GO:0070588	EntrezGene:LOC100262250	wikigene:LOC100262250	PFAM:PF01956	PIRSF:PIRSF023322
PANTHER:PTHR20917	SMART:SM01415	TIGR:TC68203	InterPro:TMCO1	TMHMM:TMhelix	UniParc:UPI00015CA486
ArrayExpress:VIT_08s0007g06790	EnsemblPlantsGene:VIT_08s0007g06790	EnsemblPlants:VIT_08s0007g06790.t01	unigene:Vvi.5701	RefSeq:XP_002280441	RefSeq:XP_002280441.1
SEG:seg	:	:	:	:	:

Description

Calcium load-activated calcium channel [Source:UniProtKB/TrEMBL;Acc:D7TIB6]

Coordinates

chr8:+:20451492..20452434

Molecular Weight (calculated)

21025.9 Da

IEP (calculated)

10.480

GRAVY (calculated)

0.122

Length

193 amino acids

Sequence
(BLAST)

001: MAPSALLSGS KYSDSLAVVG ISICTAIICE AISWLLIYRT TSYKTLRSSI DRAAKKLETM KTTSDAQKFT KKSKTKKMDR VETSLKESSR DLSLFKFKSG
101: AVVALVLFAV FGLLNSLFEG KSVAKLPFVP ISIVMKMSHR GLNGNDPTDC SMAFLYFLCS ISIRTNLQKF LGFSPPRGAA GAGLFPMPDP KTN

Best Arabidopsis Sequence Match ( AT5G06660.1 )
(BLAST)

001: MATAIPLFAS FKYADSLTVV GISFCTALVC EAISWILIYR TSSYKSLKSS IDKASKKLET MKTDNPSSKL TNKKSKTKKI DRVESSLKES SRDLSLFKFK
101: SGAVVALVLF VVFGLLNSLF EGKVVAKLPF HPITIVRKMS HRGLKGDDST DCSMAFLYLL CSISIRTNLQ KFLGFSPPRG AAGAGGLFPM PDPKTN

Arabidopsis Description

Calcium load-activated calcium channel [Source:UniProtKB/TrEMBL;Acc:Q9FG04]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.