CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
plasma membrane 4
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06758	Soybean	plasma membrane	98.94	97.91
VIT_08s0007g06790.t01	Wine grape	plasma membrane	80.95	79.27
AT3G12030.1	Thale cress	plasma membrane	80.42	77.55
Bra038695.1-P	Field mustard	plasma membrane	79.89	77.44
CDY47899	Canola	plasma membrane	79.89	77.44
Solyc10g079000.1.1	Tomato	nucleus	79.37	77.32
PGSC0003DMT400029800	Potato	plasma membrane	79.37	77.32
AT5G06660.1	Thale cress	plasma membrane	79.89	77.04
KRH46963	Soybean	plastid	38.1	64.86
Zm00001d033818_P002	Maize	extracellular	67.72	64.32
TraesCS4D01G052900.1	Wheat	golgi	66.67	63.32
TraesCS4B01G052700.1	Wheat	endoplasmic reticulum, plastid, vacuole	66.14	62.81
Zm00001d013397_P001	Maize	plastid	66.67	62.69
EER90966	Sorghum	endoplasmic reticulum, plastid, vacuole	67.2	62.56
Os03t0721400-01	Rice	plasma membrane	66.14	59.81
KXG25953	Sorghum	plastid	38.62	48.67
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	28.57	44.63

Protein Annotations

EntrezGene:100782593	MapMan:35.2	EMBL:ACUP02012033	EMBL:BT099132	UniProt:C6TN19	ncoils:Coil
InterPro:EMC3/TMCO1	EnsemblPlantsGene:GLYMA_19G108300	GO:GO:0003674	GO:GO:0005215	GO:GO:0005262	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006810	GO:GO:0006811
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0030176
GO:GO:0032469	GO:GO:0070588	ProteinID:KRG94770.1	EnsemblPlants:KRG94771	ProteinID:KRG94771	ProteinID:KRG94771.1
ProteinID:KRG94772.1	ProteinID:KRG94773.1	PFAM:PF01956	PIRSF:PIRSF023322	PANTHER:PTHR20917	SMART:SM01415
InterPro:TMCO1	TMHMM:TMhelix	UniParc:UPI0001B1731A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:-:36079173..36083141

Molecular Weight (calculated)

20966.8 Da

IEP (calculated)

10.376

GRAVY (calculated)

0.047

Length

189 amino acids

Sequence
(BLAST)

001: MAYPFSDFKY SDGLSVVGIS FCTAIVCEAI SWVLIYRTNS YKNLRSSIDK ASKKLETMKT DSNKINIKKS KTKKIDRVET SLKESSRDLS LFKFKSGGVV
101: ALVLFVVFGL LNSLFEGKVV AKLPFKPFGL IMKMSHRGLQ GNDPTDCSMA FLYFLCSISI RTNLQKFLGF APPRGASAGL FPMPDPKTS

Best Arabidopsis Sequence Match ( AT5G06660.1 )
(BLAST)

001: MATAIPLFAS FKYADSLTVV GISFCTALVC EAISWILIYR TSSYKSLKSS IDKASKKLET MKTDNPSSKL TNKKSKTKKI DRVESSLKES SRDLSLFKFK
101: SGAVVALVLF VVFGLLNSLF EGKVVAKLPF HPITIVRKMS HRGLKGDDST DCSMAFLYLL CSISIRTNLQ KFLGFSPPRG AAGAGGLFPM PDPKTN

Arabidopsis Description

Calcium load-activated calcium channel [Source:UniProtKB/TrEMBL;Acc:Q9FG04]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.