Factsheet for TraesCS4D01G052900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 1
endoplasmic reticulum 3
extracellular 2
vacuole 3
plasma membrane 2
golgi 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G052700.1	Wheat	endoplasmic reticulum, plastid, vacuole	98.49	98.49
Zm00001d033818_P002	Maize	extracellular	86.93	86.93
EER90966	Sorghum	endoplasmic reticulum, plastid, vacuole	87.94	86.21
Zm00001d013397_P001	Maize	plastid	85.93	85.07
Os03t0721400-01	Rice	plasma membrane	87.44	83.25
KRG94771	Soybean	endoplasmic reticulum	63.32	66.67
KRH06758	Soybean	plasma membrane	63.82	66.49
VIT_08s0007g06790.t01	Wine grape	plasma membrane	63.82	65.8
AT5G06660.1	Thale cress	plasma membrane	63.32	64.29
CDY47899	Canola	plasma membrane	62.81	64.1
Bra038695.1-P	Field mustard	plasma membrane	62.81	64.1
AT3G12030.1	Thale cress	plasma membrane	62.81	63.78
PGSC0003DMT400029800	Potato	plasma membrane	61.31	62.89
Solyc10g079000.1.1	Tomato	nucleus	61.31	62.89
KXG25953	Sorghum	plastid	44.22	58.67
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	28.64	47.11
KRH46963	Soybean	plastid	24.12	43.24

Protein Annotations

MapMan:35.2	ncoils:Coil	InterPro:EMC3/TMCO1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005262
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0019725	GO:GO:0030176	GO:GO:0032469
PFAM:PF01956	PIRSF:PIRSF023322	PANTHER:PTHR20917	SMART:SM01415	InterPro:TMCO1	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS4D01G052900	EnsemblPlants:TraesCS4D01G052900.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:-:29025268..29025867

Molecular Weight (calculated)

20970.6 Da

IEP (calculated)

10.595

GRAVY (calculated)

0.178

Length

199 amino acids

Sequence
(BLAST)

001: MASALSSLRY GDSLSVVAIS GATAVLCEAI SWLLIYRTAT YNSLRASIER HSRKLDSMKS VSSGTGGAAP SSQPASSRAK KMDRVESSLK DASRELSLAK
101: LKSGAVVAAV LFVVFGLLNS LFEGRAVAKL PFAPVPLVQR MSHRGLPGND PTDCAMVFLY FLCSMSIRTN LQKLLGFTPP RAAAGAGGGL FAMPDPKTN

Best Arabidopsis Sequence Match ( AT5G06660.1 )
(BLAST)

001: MATAIPLFAS FKYADSLTVV GISFCTALVC EAISWILIYR TSSYKSLKSS IDKASKKLET MKTDNPSSKL TNKKSKTKKI DRVESSLKES SRDLSLFKFK
101: SGAVVALVLF VVFGLLNSLF EGKVVAKLPF HPITIVRKMS HRGLKGDDST DCSMAFLYLL CSISIRTNLQ KFLGFSPPRG AAGAGGLFPM PDPKTN

Arabidopsis Description

Calcium load-activated calcium channel [Source:UniProtKB/TrEMBL;Acc:Q9FG04]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.