Factsheet for PGSC0003DMT400063904

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400038341

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	PGSC0003DMT400038341	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g063290.2.1	Tomato	nucleus	99.64	99.64
PGSC0003DMT400079142	Potato	cytosol	91.79	99.23
KRH60418	Soybean	mitochondrion, nucleus	85.71	88.24
KRH70352	Soybean	endoplasmic reticulum, nucleus	86.07	87.64
KRH27864	Soybean	nucleus	86.07	87.64
KRH27874	Soybean	nucleus	86.07	87.64
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	84.29	86.45
Os07t0207400-01	Rice	cytosol, golgi, nucleus, plasma membrane	50.71	86.06
GSMUA_Achr1P22950_001	Banana	cytosol, endoplasmic reticulum, nucleus	77.14	85.04
CDY06903	Canola	cytosol	76.79	83.98
GSMUA_AchrUn_...	Banana	cytosol	65.0	83.87
GSMUA_Achr1P12890_001	Banana	cytosol	65.36	83.56
CDY45881	Canola	cytosol	82.14	83.33
GSMUA_Achr2P07800_001	Banana	cytosol	65.71	83.26
KRH41719	Soybean	nucleus	41.07	82.73
AT3G57490.1	Thale cress	cytosol	80.71	81.88
Bra000242.1-P	Field mustard	cytosol	82.14	81.56
Os03t0807800-01	Rice	nucleus	79.64	81.39
CDY22542	Canola	cytosol	81.79	81.21
CDY44553	Canola	cytosol	81.07	81.07
Bra035439.1-P	Field mustard	cytosol	81.07	81.07
CDX79908	Canola	cytosol	82.14	80.7
TraesCS5B01G468500.1	Wheat	plastid	78.93	80.66
Zm00001d013034_P001	Maize	plastid	78.93	80.66
Bra004654.1-P	Field mustard	cytosol	81.79	80.35
EER93242	Sorghum	cytosol	78.57	80.29
EER93243	Sorghum	cytosol	78.57	80.29
Zm00001d034550_P001	Maize	plasma membrane, plastid	78.57	80.29
TraesCS5A01G458900.1	Wheat	cytosol	78.57	80.0
CDY14790	Canola	cytosol	81.43	80.0
Bra016913.1-P	Field mustard	cytosol	81.43	80.0
AT2G41840.1	Thale cress	cytosol	81.43	80.0
AT1G58380.1	Thale cress	cytosol	80.36	79.23
TraesCS5D01G470000.1	Wheat	extracellular, golgi, plastid, unclear	78.93	79.21
AT1G58684.1	Thale cress	cytosol	80.0	78.87
AT1G58983.1	Thale cress	cytosol	80.0	78.87
AT1G59359.1	Thale cress	cytosol	80.0	78.87
TraesCS3B01G376600.1	Wheat	nucleus	77.86	78.42
TraesCS3A01G366100.1	Wheat	golgi	77.86	78.42
Zm00001d019147_P001	Maize	plasma membrane, plastid	77.86	78.14
HORVU3Hr1G086050.1	Barley	cytosol	77.5	78.06
TraesCS3D01G338200.1	Wheat	cytosol	77.5	78.06
EER96052	Sorghum	cytosol	77.5	77.78
PGSC0003DMT400013052	Potato	cytosol	29.29	75.93
CDY35397	Canola	cytosol, extracellular	82.14	75.91
CDY42063	Canola	mitochondrion	25.36	73.2
GSMUA_Achr8P31470_001	Banana	cytosol	35.71	64.94
HORVU5Hr1G109910.2	Barley	cytosol	69.64	64.36
OQU76471	Sorghum	cytosol	43.93	56.16
CDY65554	Canola	cytosol	8.93	46.3
OQU90562	Sorghum	cytosol, plastid	28.21	40.93
Bra027857.1-P	Field mustard	cytosol, mitochondrion, nucleus	8.21	35.94

Protein Annotations

EntrezGene:102581781	MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	ProteinID:AFW90641	ProteinID:AFW90641.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538
GO:GO:0030529	InterPro:IPR013810	InterPro:IPR014721	EMBL:JX576285	UniProt:M1CBF6	PFAM:PF00333
PFAM:PF03719	EnsemblPlantsGene:PGSC0003DMG400024838	PGSC:PGSC0003DMG400024838	EnsemblPlants:PGSC0003DMT400063904	ScanProsite:PS00585	PFscan:PS50881
PANTHER:PTHR13718	PANTHER:PTHR13718:SF79	InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_N_CS	InterPro:Ribosomal_S5_euk/arc	SUPFAM:SSF54211	SUPFAM:SSF54768	TIGRFAMs:TIGR01020
UniParc:UPI000294EC9D	RefSeq:XP_006356337.1	SEG:seg	:	:	:

Description

40S ribosomal protein S2 [Source:PGSC_GENE;Acc:PGSC0003DMG400024838]

Coordinates

chr4:-:57614141..57615955

Molecular Weight (calculated)

30564.4 Da

IEP (calculated)

10.967

GRAVY (calculated)

-0.336

Length

280 amino acids

Sequence
(BLAST)

001: MAERGGGDRG GFGRGFGGRG GRGGDRGGRG RGGRRPRRET EEEKWVPVTK LGRLVKDGKI RSLEQIYLHS LPIKEFQIID TLIGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFVVVGDGNG HVGLGVKCSK EVATAIRGGI ILAKLSVIPV RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGAGIV AARVPKKVLQ
201: FAGIEDVFTS SRGSTKTLGN FVKATFDCLM KTYGFLTPDF WKETRFTKSP FQEYFDILAK PANKVIVYAT EEAAPERVEA

Best Arabidopsis Sequence Match ( AT1G58983.1 )
(BLAST)

001: MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA

Arabidopsis Description

RPS2B40S ribosomal protein S2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.