CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004654.1-P	Field mustard	cytosol	99.65	99.65
CDY14790	Canola	cytosol	96.14	96.14
CDY06903	Canola	cytosol	85.61	95.31
CDY22542	Canola	cytosol	92.98	93.97
CDY35397	Canola	cytosol, extracellular	92.98	87.46
CDY45881	Canola	cytosol	84.21	86.96
KRH60418	Soybean	mitochondrion, nucleus	81.4	85.29
CDY44553	Canola	cytosol	83.16	84.64
KRH41719	Soybean	nucleus	41.05	84.17
AT3G57490.1	Thale cress	cytosol	81.4	84.06
KRH70352	Soybean	endoplasmic reticulum, nucleus	80.7	83.64
KRH27874	Soybean	nucleus	80.7	83.64
KRH27864	Soybean	nucleus	80.7	83.64
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	78.95	82.42
PGSC0003DMT400063904	Potato	cytosol	80.7	82.14
Solyc04g063290.2.1	Tomato	nucleus	80.35	81.79
Solyc04g074300.2.1	Tomato	nucleus	80.35	81.79
CDY42063	Canola	mitochondrion	27.72	81.44
PGSC0003DMT400079142	Potato	cytosol	72.98	80.31
CDY65554	Canola	cytosol	11.23	59.26
PGSC0003DMT400013052	Potato	cytosol	21.05	55.56
CDY42822	Canola	mitochondrion	17.19	51.58
CDX82895	Canola	extracellular	28.77	50.62
CDX99877	Canola	mitochondrion, plastid	17.19	48.04

Protein Annotations

MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	GO:A0A078CXQ0	EnsemblPlants:CDX79908	ProteinID:CDX79908
ProteinID:CDX79908.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00132762001	InterPro:IPR013810	InterPro:IPR014721	PFAM:PF00333	PFAM:PF03719
ScanProsite:PS00585	PFscan:PS50881	PANTHER:PTHR13718	PANTHER:PTHR13718:SF79	InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_N_CS	InterPro:Ribosomal_S5_euk/arc	SUPFAM:SSF54211
SUPFAM:SSF54768	TIGRFAMs:TIGR01020	UniParc:UPI0001CAB1B4	SEG:seg	:	:

Description

BnaA05g02480D

Coordinates

chrLK031819:+:784464..785799

Molecular Weight (calculated)

30905.6 Da

IEP (calculated)

10.857

GRAVY (calculated)

-0.461

Length

285 amino acids

Sequence
(BLAST)

001: MAERGGERGA ERGGDRGGFG RGFGGGRGDR GGRGGPRGRG GRRGGRPTEE EKWTPVTKLG RLVQAGKIQK LEQIYLHSLP VKEYQIIDLL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDTNGHV GLGVKCSKEV ATAIRGGIIL AKLSVIPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGAGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETSFKKSPYQ EYTDLLAEKG TKKLITEVED QQASS

Best Arabidopsis Sequence Match ( AT1G58380.1 )
(BLAST)

001: MAERGGEGGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA

Arabidopsis Description

RPS2AAt1g59359 [Source:UniProtKB/TrEMBL;Acc:G1JSI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.