CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY22038
CDY52785

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	CDY22038	AT4G02220.1	21798944
AT2G41840.1	CDY52785	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035439.1-P	Field mustard	cytosol	100.0	100.0
CDY45881	Canola	cytosol	93.93	95.29
CDY06903	Canola	cytosol	82.14	89.84
CDY42063	Canola	mitochondrion	30.71	88.66
AT1G58684.1	Thale cress	cytosol	88.21	86.97
AT1G58983.1	Thale cress	cytosol	88.21	86.97
AT1G59359.1	Thale cress	cytosol	88.21	86.97
CDY22542	Canola	cytosol	87.5	86.88
CDY14790	Canola	cytosol	87.5	85.96
AT1G58380.1	Thale cress	cytosol	86.79	85.56
KRH60418	Soybean	mitochondrion, nucleus	81.07	83.46
CDX79908	Canola	cytosol	84.64	83.16
KRH41719	Soybean	nucleus	40.71	82.01
KRH70352	Soybean	endoplasmic reticulum, nucleus	80.0	81.45
KRH27864	Soybean	nucleus	80.0	81.45
KRH27874	Soybean	nucleus	80.0	81.45
Solyc04g074300.2.1	Tomato	nucleus	81.43	81.43
PGSC0003DMT400063904	Potato	cytosol	81.07	81.07
Solyc04g063290.2.1	Tomato	nucleus	80.71	80.71
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	78.57	80.59
AT2G41840.1	Thale cress	cytosol	81.43	80.0
CDY35397	Canola	cytosol, extracellular	86.43	79.87
PGSC0003DMT400079142	Potato	cytosol	73.57	79.54
CDY65554	Canola	cytosol	14.29	74.07
PGSC0003DMT400013052	Potato	cytosol	21.79	56.48
CDX82895	Canola	extracellular	29.29	50.62
CDY42822	Canola	mitochondrion	17.14	50.53
CDX99877	Canola	mitochondrion, plastid	16.79	46.08

Protein Annotations

MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	GO:A0A078I619	UniProt:A0A078I619	EnsemblPlants:CDY44553
ProteinID:CDY44553	ProteinID:CDY44553.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00080358001	InterPro:IPR013810	InterPro:IPR014721
PFAM:PF00333	PFAM:PF03719	ScanProsite:PS00585	PFscan:PS50881	PANTHER:PTHR13718	PANTHER:PTHR13718:SF79
InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_N_CS
InterPro:Ribosomal_S5_euk/arc	SUPFAM:SSF54211	SUPFAM:SSF54768	TIGRFAMs:TIGR01020	UniParc:UPI00025448D7	SEG:seg

Description

BnaA01g21860DBnaA01g21860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I619]

Coordinates

chrLK032594:+:148681..150217

Molecular Weight (calculated)

30382.9 Da

IEP (calculated)

10.831

GRAVY (calculated)

-0.414

Length

280 amino acids

Sequence
(BLAST)

001: MAERGGERGA ERGGDRGGFG RGFGGRGGGR GGPRGRGRRA GRPTEEEKWT PVTKLGRLVR DGKIKQLEQI YLHSLPVKEY QIIDLLVGPS LKDEVMKIMP
101: VQKQTRAGQR TRFKAFVVVG DGNGHVGLGV KCSKEVATAI RGGIILAKLS VVPVRRGYWG NKIGKPHTVP CKVTGKCGSV TVRMVPAPRG AGIVAARVPK
201: KVLQFAGIDD VFTSSRGSTK TLGNFVKATF DCLQKTYGFL TPEFWKETSF KKSPYQEYTD FLTTKADSAA KVITEVEDQA

Best Arabidopsis Sequence Match ( AT1G58983.1 )
(BLAST)

001: MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA

Arabidopsis Description

RPS2B40S ribosomal protein S2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.