Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400038341 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G41840.1 | PGSC0003DMT400038341 | AT4G02220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42063 | Canola | mitochondrion | 49.07 | 54.64 |
| KRH41719 | Soybean | nucleus | 55.56 | 43.17 |
| CDY65554 | Canola | cytosol | 21.3 | 42.59 |
| Os07t0207400-01 | Rice | cytosol, golgi, nucleus, plasma membrane | 58.33 | 38.18 |
| GSMUA_Achr8P31470_001 | Banana | cytosol | 52.78 | 37.01 |
| Bra027857.1-P | Field mustard | cytosol, mitochondrion, nucleus | 20.37 | 34.38 |
| PGSC0003DMT400079142 | Potato | cytosol | 75.93 | 31.66 |
| GSMUA_Achr1P12890_001 | Banana | cytosol | 61.11 | 30.14 |
| GSMUA_AchrUn_... | Banana | cytosol | 60.19 | 29.95 |
| GSMUA_Achr2P07800_001 | Banana | cytosol | 60.19 | 29.41 |
| Solyc04g074300.2.1 | Tomato | nucleus | 75.93 | 29.29 |
| PGSC0003DMT400063904 | Potato | cytosol | 75.93 | 29.29 |
| GSMUA_Achr1P22950_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 60.19 | 25.59 |
| OQU76471 | Sorghum | cytosol | 50.93 | 25.11 |
| KRH60418 | Soybean | mitochondrion, nucleus | 60.19 | 23.9 |
| Os03t0807800-01 | Rice | nucleus | 60.19 | 23.72 |
| KRH27874 | Soybean | nucleus | 60.19 | 23.64 |
| KRH27864 | Soybean | nucleus | 60.19 | 23.64 |
| KRH70352 | Soybean | endoplasmic reticulum, nucleus | 60.19 | 23.64 |
| TraesCS5B01G468500.1 | Wheat | plastid | 59.26 | 23.36 |
| TraesCS5A01G458900.1 | Wheat | cytosol | 59.26 | 23.27 |
| VIT_08s0007g08370.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 58.33 | 23.08 |
| CDY06903 | Canola | cytosol | 54.63 | 23.05 |
| TraesCS3A01G366100.1 | Wheat | golgi | 59.26 | 23.02 |
| TraesCS3B01G376600.1 | Wheat | nucleus | 59.26 | 23.02 |
| HORVU3Hr1G086050.1 | Barley | cytosol | 59.26 | 23.02 |
| TraesCS5D01G470000.1 | Wheat | extracellular, golgi, plastid, unclear | 59.26 | 22.94 |
| TraesCS3D01G338200.1 | Wheat | cytosol | 58.33 | 22.66 |
| Zm00001d013034_P001 | Maize | plastid | 57.41 | 22.63 |
| Zm00001d034550_P001 | Maize | plasma membrane, plastid | 57.41 | 22.63 |
| EER93243 | Sorghum | cytosol | 56.48 | 22.26 |
| EER93242 | Sorghum | cytosol | 56.48 | 22.26 |
| EER96052 | Sorghum | cytosol | 57.41 | 22.22 |
| Zm00001d019147_P001 | Maize | plasma membrane, plastid | 57.41 | 22.22 |
| CDY45881 | Canola | cytosol | 56.48 | 22.1 |
| Bra035439.1-P | Field mustard | cytosol | 56.48 | 21.79 |
| CDY44553 | Canola | cytosol | 56.48 | 21.79 |
| AT3G57490.1 | Thale cress | cytosol | 54.63 | 21.38 |
| Bra000242.1-P | Field mustard | cytosol | 55.56 | 21.28 |
| HORVU5Hr1G109910.2 | Barley | cytosol | 59.26 | 21.12 |
| CDX79908 | Canola | cytosol | 55.56 | 21.05 |
| Bra004654.1-P | Field mustard | cytosol | 55.56 | 21.05 |
| CDY22542 | Canola | cytosol | 54.63 | 20.92 |
| CDY14790 | Canola | cytosol | 54.63 | 20.7 |
| Bra016913.1-P | Field mustard | cytosol | 54.63 | 20.7 |
| AT1G59359.1 | Thale cress | cytosol | 53.7 | 20.42 |
| AT1G58983.1 | Thale cress | cytosol | 53.7 | 20.42 |
| AT1G58684.1 | Thale cress | cytosol | 53.7 | 20.42 |
| AT1G58380.1 | Thale cress | cytosol | 53.7 | 20.42 |
| AT2G41840.1 | Thale cress | cytosol | 52.78 | 20.0 |
| CDY35397 | Canola | cytosol, extracellular | 55.56 | 19.8 |
| OQU90562 | Sorghum | cytosol, plastid | 27.78 | 15.54 |
Protein Annotations
| Gene3D:3.30.230.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR014721 | UniProt:M1A283 |
| PFAM:PF03719 | EnsemblPlantsGene:PGSC0003DMG400005091 | PGSC:PGSC0003DMG400005091 | EnsemblPlants:PGSC0003DMT400013052 | PANTHER:PTHR13718 | PANTHER:PTHR13718:SF79 |
| InterPro:Ribosomal_S5 | InterPro:Ribosomal_S5_C | InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Ribosomal_S5_D2-typ_fold_subgr | SUPFAM:SSF54211 | UniParc:UPI00029489FE |
| SEG:seg | : | : | : | : | : |
Description
40S ribosomal protein S2 [Source:PGSC_GENE;Acc:PGSC0003DMG400005091]
Coordinates
chr7:+:15314004..15314330
Molecular Weight (calculated)
12341.6 Da
IEP (calculated)
4.801
GRAVY (calculated)
-0.201
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MWVCYCEGGA SSSWCWYCCS SCPKKVLQFA GIEDVFTSSR GSTKTLGNFV KETFDYLMKT YGFLTPDFWK EPSFTKSPFQ EYFDILAKPA NKVIVYATEE
101: AAPERFEA
101: AAPERFEA
001: MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA
Arabidopsis Description
RPS2B40S ribosomal protein S2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VB8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.