Factsheet for TraesCS5D01G470000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, extracellular, unclear

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, plastid, unclear
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 19786127
plastid: 22160430
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G115400.1
TraesCS2D01G317600.1
TraesCS4A01G116200.2
TraesCS4B01G188000.1
TraesCS4D01G189400.1
TraesCS5D01G058500.1
TraesCS7A01G534200.1
TraesCS7B01G451300.1
TraesCS7D01G521500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	TraesCS1B01G115400.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS2D01G317600.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS4A01G116200.2	AT4G02220.1	21798944
AT2G41840.1	TraesCS4B01G188000.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS4D01G189400.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS5D01G058500.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS7A01G534200.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS7B01G451300.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS7D01G521500.1	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G458900.1	Wheat	cytosol	97.85	99.27
TraesCS5B01G468500.1	Wheat	plastid	97.49	99.27
TraesCS3D01G338200.1	Wheat	cytosol	94.27	94.6
Os03t0807800-01	Rice	nucleus	91.04	92.7
GSMUA_Achr1P22950_001	Banana	cytosol, endoplasmic reticulum, nucleus	75.63	83.07
KRH60418	Soybean	mitochondrion, nucleus	79.93	81.99
KRH70352	Soybean	endoplasmic reticulum, nucleus	80.65	81.82
KRH27864	Soybean	nucleus	80.65	81.82
KRH27874	Soybean	nucleus	80.29	81.45
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	79.57	81.32
KRH41719	Soybean	nucleus	40.5	81.3
GSMUA_AchrUn_...	Banana	cytosol	62.72	80.65
GSMUA_Achr2P07800_001	Banana	cytosol	63.08	79.64
GSMUA_Achr1P12890_001	Banana	cytosol	62.37	79.45
AT3G57490.1	Thale cress	cytosol	78.49	79.35
PGSC0003DMT400063904	Potato	cytosol	79.21	78.93
HORVU5Hr1G109910.2	Barley	cytosol	85.66	78.88
Solyc04g063290.2.1	Tomato	nucleus	78.85	78.57
Solyc04g074300.2.1	Tomato	nucleus	78.85	78.57
AT2G41840.1	Thale cress	cytosol	79.57	77.89
PGSC0003DMT400079142	Potato	cytosol	71.68	77.22
Bra016913.1-P	Field mustard	cytosol	78.85	77.19
Bra004654.1-P	Field mustard	cytosol	78.85	77.19
Bra000242.1-P	Field mustard	cytosol	77.78	76.95
AT1G59359.1	Thale cress	cytosol	77.42	76.06
AT1G58983.1	Thale cress	cytosol	77.42	76.06
AT1G58684.1	Thale cress	cytosol	77.42	76.06
Bra035439.1-P	Field mustard	cytosol	75.99	75.71
AT1G58380.1	Thale cress	cytosol	77.06	75.7
GSMUA_Achr8P31470_001	Banana	cytosol	35.48	64.29
PGSC0003DMT400013052	Potato	cytosol	22.94	59.26
Bra027857.1-P	Field mustard	cytosol, mitochondrion, nucleus	8.24	35.94

Protein Annotations

MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	InterPro:IPR013810	InterPro:IPR014721	PFAM:PF00333
PFAM:PF03719	ScanProsite:PS00585	PFscan:PS50881	PANTHER:PTHR13718	PANTHER:PTHR13718:SF74	InterPro:Ribosomal_S5
InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_N_CS	InterPro:Ribosomal_S5_euk/arc
SUPFAM:SSF54211	SUPFAM:SSF54768	TIGRFAMs:TIGR01020	EnsemblPlantsGene:TraesCS5D01G470000	EnsemblPlants:TraesCS5D01G470000.1	SEG:seg

Description

No Description!

Coordinates

chr5D:+:510914358..510915892

Molecular Weight (calculated)

30430.2 Da

IEP (calculated)

10.873

GRAVY (calculated)

-0.382

Length

279 amino acids

Sequence
(BLAST)

001: MADRGGERGV GERGGDRGGF GRGFGRGGRG DRGGRRGGRR GPRQEEEKWV PVTKLGRLVK EGRFTKMEEI YLHSLPVKEH QIVETLCPGL KDEVMKITPV
101: QKQTRAGQRT RFKAFVVVGD SNGHVGLGVK CAKEVATAIR GAIILAKLSI VPVRRGYWGN KIGQPHTVPC KVTGKCGSVT VRMVPAPRGS GIVAARVPKK
201: VLQFAGIDDV FTSSRGSTKT LGNFVKATFD CLMKTYGFLT PDFWRETTFT KAPYQEFTDI LAKPTKALML DAPAEKIEA

Best Arabidopsis Sequence Match ( AT3G57490.1 )
(BLAST)

001: MAERGVERGG DRGDFGRGFG GRGGGRGGPR GRGRRAGRAP EEEKWVPVTK LGRLVKEGKI TKIEQIYLHS LPVKEYQIID LLVGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE

Arabidopsis Description

RPS2D40S ribosomal protein S2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCM3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.