Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- nucleus 1
- cytosol 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P07500_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G41840.1 | GSMUA_Achr3P07500_001 | AT4G02220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400013052 | Potato | cytosol | 37.01 | 52.78 |
| GSMUA_AchrUn_... | Banana | cytosol | 73.38 | 52.07 |
| GSMUA_Achr1P12890_001 | Banana | cytosol | 72.08 | 50.68 |
| KRH41719 | Soybean | nucleus | 44.16 | 48.92 |
| GSMUA_Achr2P07800_001 | Banana | cytosol | 70.13 | 48.87 |
| GSMUA_Achr1P22950_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 74.03 | 44.88 |
| Os07t0207400-01 | Rice | cytosol, golgi, nucleus, plasma membrane | 42.21 | 39.39 |
| KRH60418 | Soybean | mitochondrion, nucleus | 68.83 | 38.97 |
| PGSC0003DMT400079142 | Potato | cytosol | 64.29 | 38.22 |
| Os03t0807800-01 | Rice | nucleus | 66.88 | 37.59 |
| KRH70352 | Soybean | endoplasmic reticulum, nucleus | 66.88 | 37.45 |
| KRH27874 | Soybean | nucleus | 66.88 | 37.45 |
| KRH27864 | Soybean | nucleus | 66.88 | 37.45 |
| VIT_08s0007g08370.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 66.23 | 37.36 |
| Zm00001d034550_P001 | Maize | plasma membrane, plastid | 64.94 | 36.5 |
| Zm00001d013034_P001 | Maize | plastid | 64.29 | 36.13 |
| TraesCS5B01G468500.1 | Wheat | plastid | 64.29 | 36.13 |
| TraesCS5A01G458900.1 | Wheat | cytosol | 64.29 | 36.0 |
| Bra027857.1-P | Field mustard | cytosol, mitochondrion, nucleus | 14.94 | 35.94 |
| EER93243 | Sorghum | cytosol | 63.64 | 35.77 |
| EER93242 | Sorghum | cytosol | 63.64 | 35.77 |
| PGSC0003DMT400063904 | Potato | cytosol | 64.94 | 35.71 |
| Solyc04g074300.2.1 | Tomato | nucleus | 64.94 | 35.71 |
| Solyc04g063290.2.1 | Tomato | nucleus | 64.94 | 35.71 |
| TraesCS5D01G470000.1 | Wheat | extracellular, golgi, plastid, unclear | 64.29 | 35.48 |
| TraesCS3B01G376600.1 | Wheat | nucleus | 62.34 | 34.53 |
| TraesCS3A01G366100.1 | Wheat | golgi | 62.34 | 34.53 |
| AT3G57490.1 | Thale cress | cytosol | 61.69 | 34.42 |
| Zm00001d019147_P001 | Maize | plasma membrane, plastid | 62.34 | 34.41 |
| TraesCS3D01G338200.1 | Wheat | cytosol | 61.69 | 34.17 |
| EER96052 | Sorghum | cytosol | 61.69 | 34.05 |
| HORVU3Hr1G086050.1 | Barley | cytosol | 61.04 | 33.81 |
| OQU76471 | Sorghum | cytosol | 47.4 | 33.33 |
| Bra016913.1-P | Field mustard | cytosol | 60.39 | 32.63 |
| Bra004654.1-P | Field mustard | cytosol | 60.39 | 32.63 |
| Bra000242.1-P | Field mustard | cytosol | 59.74 | 32.62 |
| Bra035439.1-P | Field mustard | cytosol | 57.79 | 31.79 |
| AT1G58983.1 | Thale cress | cytosol | 58.44 | 31.69 |
| AT1G59359.1 | Thale cress | cytosol | 58.44 | 31.69 |
| AT1G58684.1 | Thale cress | cytosol | 58.44 | 31.69 |
| AT1G58380.1 | Thale cress | cytosol | 58.44 | 31.69 |
| AT2G41840.1 | Thale cress | cytosol | 58.44 | 31.58 |
| HORVU5Hr1G109910.2 | Barley | cytosol | 59.74 | 30.36 |
Protein Annotations
| Gene3D:3.30.230.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr8G31470_001 | EnsemblPlants:GSMUA_Achr8P31470_001 |
| EnsemblPlants:GSMUA_Achr8T31470_001 | InterPro:IPR014721 | UniProt:M0TV99 | PFAM:PF03719 | PANTHER:PTHR13718 | PANTHER:PTHR13718:SF74 |
| InterPro:Ribosomal_S5 | InterPro:Ribosomal_S5_C | InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Ribosomal_S5_D2-typ_fold_subgr | SUPFAM:SSF54211 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI000296AA7D | SEG:seg | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G31470_001]
Coordinates
chr8:-:33128083..33130617
Molecular Weight (calculated)
16596.1 Da
IEP (calculated)
9.074
GRAVY (calculated)
0.031
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIVAASVAG LAVAGATGAV SGAAAVGGGR RNEEEKWVPV AKLGRLHQII DTLLGGRIKD EVMKILPVAG KCGSVTVLMF AGIEDVFTSS RGSTKTLGNF
101: VTATFEYLMK TYRFLTPDFW MDTRFSKSPF QEYTDLRAKP TKAILLDNTE KDES
101: VTATFEYLMK TYRFLTPDFW MDTRFSKSPF QEYTDLRAKP TKAILLDNTE KDES
001: MAERGVERGG DRGDFGRGFG GRGGGRGGPR GRGRRAGRAP EEEKWVPVTK LGRLVKEGKI TKIEQIYLHS LPVKEYQIID LLVGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE
Arabidopsis Description
RPS2D40S ribosomal protein S2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCM3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.