CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89015
KRH24906
KRH37677

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	KRG89015	AT4G02220.1	21798944
AT2G41840.1	KRH24906	AT4G02220.1	21798944
AT2G41840.1	KRH37677	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42063	Canola	mitochondrion	52.52	75.26
Os07t0207400-01	Rice	cytosol, golgi, nucleus, plasma membrane	77.7	65.45
PGSC0003DMT400013052	Potato	cytosol	43.17	55.56
CDY65554	Canola	cytosol	20.86	53.7
KRH60418	Soybean	mitochondrion, nucleus	95.68	48.9
KRH27864	Soybean	nucleus	92.81	46.91
KRH27874	Soybean	nucleus	92.81	46.91
KRH70352	Soybean	endoplasmic reticulum, nucleus	92.81	46.91
GSMUA_Achr1P22950_001	Banana	cytosol, endoplasmic reticulum, nucleus	84.89	46.46
GSMUA_AchrUn_...	Banana	cytosol	70.5	45.16
CDY06903	Canola	cytosol	82.73	44.92
GSMUA_Achr8P31470_001	Banana	cytosol	48.92	44.16
GSMUA_Achr1P12890_001	Banana	cytosol	69.06	43.84
GSMUA_Achr2P07800_001	Banana	cytosol	68.35	42.99
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	83.45	42.49
Os03t0807800-01	Rice	nucleus	83.45	42.34
Zm00001d034550_P001	Maize	plasma membrane, plastid	83.45	42.34
Zm00001d013034_P001	Maize	plastid	83.45	42.34
Bra027857.1-P	Field mustard	cytosol, mitochondrion, nucleus	19.42	42.19
CDY45881	Canola	cytosol	82.73	41.67
TraesCS5B01G468500.1	Wheat	plastid	82.01	41.61
EER93242	Sorghum	cytosol	81.3	41.24
EER93243	Sorghum	cytosol	81.3	41.24
EER96052	Sorghum	cytosol	82.73	41.22
Zm00001d019147_P001	Maize	plasma membrane, plastid	82.73	41.22
OQU76471	Sorghum	cytosol	64.75	41.1
TraesCS5A01G458900.1	Wheat	cytosol	81.3	41.09
Solyc04g074300.2.1	Tomato	nucleus	82.73	41.07
Solyc04g063290.2.1	Tomato	nucleus	82.73	41.07
PGSC0003DMT400063904	Potato	cytosol	82.73	41.07
CDX79908	Canola	cytosol	84.17	41.05
AT3G57490.1	Thale cress	cytosol	81.3	40.94
CDY22542	Canola	cytosol	82.73	40.78
CDY44553	Canola	cytosol	82.01	40.71
Bra035439.1-P	Field mustard	cytosol	82.01	40.71
Bra004654.1-P	Field mustard	cytosol	83.45	40.7
HORVU3Hr1G086050.1	Barley	cytosol	81.3	40.65
TraesCS3A01G366100.1	Wheat	golgi	81.3	40.65
TraesCS3B01G376600.1	Wheat	nucleus	81.3	40.65
TraesCS5D01G470000.1	Wheat	extracellular, golgi, plastid, unclear	81.3	40.5
Bra000242.1-P	Field mustard	cytosol	82.01	40.43
Bra016913.1-P	Field mustard	cytosol	82.73	40.35
CDY14790	Canola	cytosol	82.73	40.35
TraesCS3D01G338200.1	Wheat	cytosol	80.58	40.29
AT1G58684.1	Thale cress	cytosol	81.3	39.79
AT1G58983.1	Thale cress	cytosol	81.3	39.79
AT1G58380.1	Thale cress	cytosol	81.3	39.79
AT1G59359.1	Thale cress	cytosol	81.3	39.79
AT2G41840.1	Thale cress	cytosol	80.58	39.3
CDY35397	Canola	cytosol, extracellular	82.01	37.62
HORVU5Hr1G109910.2	Barley	cytosol	81.3	37.29
PGSC0003DMT400079142	Potato	cytosol	69.06	37.07
OQU90562	Sorghum	cytosol, plastid	35.25	25.39

Protein Annotations

EntrezGene:100784649	MapMan:17.1.3.1.2	Gene3D:3.30.230.10	EMBL:ACUP02004777	EnsemblPlantsGene:GLYMA_08G046100	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	UniProt:I1KQB9	InterPro:IPR014721	EnsemblPlants:KRH41719
ProteinID:KRH41719	ProteinID:KRH41719.1	PFAM:PF03719	PANTHER:PTHR13718	PANTHER:PTHR13718:SF79	InterPro:Ribosomal_S5
InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SUPFAM:SSF54211	UniParc:UPI00023C688D	:

Description

hypothetical protein

Coordinates

chr8:+:3635574..3637744

Molecular Weight (calculated)

15423.1 Da

IEP (calculated)

10.786

GRAVY (calculated)

-0.091

Length

139 amino acids

Sequence
(BLAST)

001: MKIMPVQKLS VIPVRRGYWG NKIGKPHNVP FKVTGKCGSV TVRMVPAPRG SGIVAIRVPK KVLQFAGIDG VFTSSRGSTK TLGNFVKATF DCLLKSYGFL
101: TLEFWKETRF SKSPFQEYTD LLAKPTGKAL ILEEERVEA

Best Arabidopsis Sequence Match ( AT3G57490.1 )
(BLAST)

001: MAERGVERGG DRGDFGRGFG GRGGGRGGPR GRGRRAGRAP EEEKWVPVTK LGRLVKEGKI TKIEQIYLHS LPVKEYQIID LLVGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE

Arabidopsis Description

RPS2D40S ribosomal protein S2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCM3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.