CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH27864
KRH27874
KRH41719
KRH60418
KRH70352

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02220.1	KRH27864	AT1G58684.1	21798944
AT4G02220.1	KRH27874	AT1G58684.1	21798944
AT4G02220.1	KRH41719	AT1G58684.1	21798944
AT4G02220.1	KRH60418	AT1G58684.1	21798944
AT4G02220.1	KRH70352	AT1G58684.1	21798944
AT4G02220.1	KRH27864	AT1G58983.1	21798944
AT4G02220.1	KRH27874	AT1G58983.1	21798944
AT4G02220.1	KRH41719	AT1G58983.1	21798944
AT4G02220.1	KRH60418	AT1G58983.1	21798944
AT4G02220.1	KRH70352	AT1G58983.1	21798944
AT4G02220.1	KRH27864	AT1G59359.1	21798944
AT4G02220.1	KRH27874	AT1G59359.1	21798944
AT4G02220.1	KRH41719	AT1G59359.1	21798944
AT4G02220.1	KRH60418	AT1G59359.1	21798944
AT4G02220.1	KRH70352	AT1G59359.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37677	Soybean	nucleus	79.55	78.57
KRG89015	Soybean	nucleus	19.2	77.0
VIT_07s0005g00910.t01	Wine grape	nucleus	55.11	53.0
AT4G02220.1	Thale cress	nucleus	50.87	48.8
CDY22038	Canola	nucleus	49.63	47.95
Solyc08g076440.2.1	Tomato	nucleus	41.15	47.83
Bra036286.1-P	Field mustard	nucleus	49.38	47.71
CDY52785	Canola	nucleus	49.38	47.48
EER92397	Sorghum	nucleus	48.38	46.75
PGSC0003DMT400038341	Potato	nucleus	49.38	46.7
Os03t0300200-01	Rice	nucleus	48.63	46.54
TraesCS1B01G115400.1	Wheat	nucleus	48.63	46.32
TraesCS4B01G188000.1	Wheat	nucleus	48.38	46.08
TraesCS2D01G317600.1	Wheat	nucleus	48.13	46.06
TraesCS4D01G189400.1	Wheat	nucleus	47.88	45.82
GSMUA_Achr3P07500_001	Banana	plastid	12.97	45.22
HORVU4Hr1G054890.2	Barley	nucleus	48.88	44.55
TraesCS4A01G116200.2	Wheat	nucleus	48.88	43.56
HORVU5Hr1G011430.1	Barley	cytosol	20.7	40.29
TraesCS7D01G521500.1	Wheat	nucleus	28.43	39.04
HORVU5Hr1G045730.3	Barley	nucleus	26.93	35.41
TraesCS7B01G451300.1	Wheat	nucleus	31.42	34.24
TraesCS7A01G534200.1	Wheat	nucleus	35.16	34.22
TraesCS5D01G058500.1	Wheat	nucleus	35.16	33.89
OQU91410	Sorghum	nucleus	38.4	33.55
Os01t0578200-00	Rice	cytosol, nucleus	13.22	33.12
Zm00001d035481_P001	Maize	nucleus	12.22	29.88

Protein Annotations

EntrezGene:100796200	Gene3D:3.30.60.180	MapMan:35.2	EMBL:ACUP02007190	EnsemblPlantsGene:GLYMA_12G070400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0046872
UniProt:I1LQY4	InterPro:IPR002893	EnsemblPlants:KRH24906	ProteinID:KRH24906	ProteinID:KRH24906.1	InterPro:PDCD2_C
PFAM:PF01753	PFAM:PF04194	ScanProsite:PS01360	PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF4
SUPFAM:SSF144232	UniParc:UPI00029631CF	InterPro:Znf_MYND	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:5153123..5156979

Molecular Weight (calculated)

45389.1 Da

IEP (calculated)

5.055

GRAVY (calculated)

-0.669

Length

401 amino acids

Sequence
(BLAST)

001: MTYVNAVHVF STFYSSPKHM DTDAIGDLVD KLKAIQNDNV EDQDQDDDFD DDDDDDEEHE PITLGFVDKP KNNWSLRRQY FPSKAGGVPA WLDPLNIPSG
101: GSFVCDNCGD PLQFLLQVYA PTEKETTFHR MLFVFMCPSM KCLLRDQHEQ WKRHPEKPSK SLKVFRCQLP RANPFYSPEC PQYNKSHKPA GSGAALCDWC
201: GTWKGDKLCS GCRQARYCSE KHQVMSWRTG HKIACQQMKV SSPVSGPNKS GTASLDSHKV GSKNLWPEFE ITIEDESDYK RDMSEENTLA NSLISRNRTD
301: DTMNSLLDNF QGDDDKKSWA SFQQCIAKAP EQVLRYYRNT NAKPIWPVSS DLPSNADIPS CSYCTGPMCC EFQILPQLLY YFGVDNENGL SGLGFNCGVC
401: M

Best Arabidopsis Sequence Match ( AT4G02220.1 )
(BLAST)

001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT

Arabidopsis Description

Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.