CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42063
CDY44553
CDY45881
CDY65554

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02220.1	CDY42063	AT1G58684.1	21798944
AT4G02220.1	CDY44553	AT1G58684.1	21798944
AT4G02220.1	CDY45881	AT1G58684.1	21798944
AT4G02220.1	CDY65554	AT1G58684.1	21798944
AT4G02220.1	CDY42063	AT1G58983.1	21798944
AT4G02220.1	CDY44553	AT1G58983.1	21798944
AT4G02220.1	CDY45881	AT1G58983.1	21798944
AT4G02220.1	CDY65554	AT1G58983.1	21798944
AT4G02220.1	CDY42063	AT1G59359.1	21798944
AT4G02220.1	CDY44553	AT1G59359.1	21798944
AT4G02220.1	CDY45881	AT1G59359.1	21798944
AT4G02220.1	CDY65554	AT1G59359.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22038	Canola	nucleus	94.24	94.7
Bra036286.1-P	Field mustard	nucleus	94.0	94.46
AT4G02220.1	Thale cress	nucleus	81.77	81.58
Solyc08g076440.2.1	Tomato	nucleus	45.56	55.07
VIT_07s0005g00910.t01	Wine grape	nucleus	54.92	54.92
KRH37677	Soybean	nucleus	52.04	53.45
EER92397	Sorghum	nucleus	52.76	53.01
Os03t0300200-01	Rice	nucleus	52.28	52.03
TraesCS2D01G317600.1	Wheat	nucleus	52.04	51.79
TraesCS4D01G189400.1	Wheat	nucleus	51.8	51.55
TraesCS1B01G115400.1	Wheat	nucleus	52.04	51.54
TraesCS4B01G188000.1	Wheat	nucleus	51.56	51.07
PGSC0003DMT400038341	Potato	nucleus	50.84	50.0
HORVU4Hr1G054890.2	Barley	nucleus	52.52	49.77
KRH24906	Soybean	nucleus	47.48	49.38
TraesCS4A01G116200.2	Wheat	nucleus	52.52	48.67
GSMUA_Achr3P07500_001	Banana	plastid	13.19	47.83
Os01t0578200-00	Rice	cytosol, nucleus	17.27	45.0
HORVU5Hr1G011430.1	Barley	cytosol	22.06	44.66
KRG89015	Soybean	nucleus	9.59	40.0
TraesCS5D01G058500.1	Wheat	nucleus	39.57	39.66
TraesCS7A01G534200.1	Wheat	nucleus	38.37	38.84
TraesCS7D01G521500.1	Wheat	nucleus	27.1	38.7
TraesCS7B01G451300.1	Wheat	nucleus	34.05	38.59
HORVU5Hr1G045730.3	Barley	nucleus	27.34	37.38
OQU91410	Sorghum	nucleus	40.53	36.82
Zm00001d035481_P001	Maize	nucleus	13.43	34.15

Protein Annotations

Gene3D:3.30.60.180	MapMan:35.2	GO:A0A078IP04	UniProt:A0A078IP04	EnsemblPlants:CDY52785	ProteinID:CDY52785
ProteinID:CDY52785.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00007842001	InterPro:IPR002893	InterPro:PDCD2_C	PFAM:PF01753
PFAM:PF04194	PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF26	SUPFAM:SSF144232	UniParc:UPI0004EE4400
InterPro:Znf_MYND	SEG:seg	:	:	:	:

Description

BnaCnng23300DBnaCnng23300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IP04]

Coordinates

chrLK033130:-:57873..60520

Molecular Weight (calculated)

47444.4 Da

IEP (calculated)

4.392

GRAVY (calculated)

-0.590

Length

417 amino acids

Sequence
(BLAST)

001: MSSFNGDDFK GLRITQLDDD DEDVEEQAPV EPINVDEFDE DDDDEDDEEE PVILGFVESP KFPWSSLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PLQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKPM RSVKVFRCQL PRVNPFYSSD APKHDGTDKP LGHGAPLCTW CGTWKGDKVC
201: GGCKTARYCS PKHQALHWHR AHKIECQQLH TVLETSDSVD NGVTLTQAQK AASKSLWKEF VLINEDESEY DTEMSETDEV AQPMVVSKRE VDDQMKSMMK
301: DFEGDADKNS WVNFQQRVDK APEQVVRYCR SSEAKPLWPM ASGRVSKSEV PNCKSCGGPR CFEFQAMPQL LFFFGGSNER ESLDWATIVV YTCENSCDSS
401: LSYNEEFVWV QVYSQTT

Best Arabidopsis Sequence Match ( AT4G02220.1 )
(BLAST)

001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT

Arabidopsis Description

Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.