Factsheet for TraesCS1B01G115400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G366100.1
TraesCS3B01G376600.1
TraesCS3D01G338200.1
TraesCS5A01G458900.1
TraesCS5B01G468500.1
TraesCS5D01G470000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02220.1	TraesCS3A01G366100.1	AT1G58684.1	21798944
AT4G02220.1	TraesCS3B01G376600.1	AT1G58684.1	21798944
AT4G02220.1	TraesCS3D01G338200.1	AT1G58684.1	21798944
AT4G02220.1	TraesCS5A01G458900.1	AT1G58684.1	21798944
AT4G02220.1	TraesCS5B01G468500.1	AT1G58684.1	21798944
AT4G02220.1	TraesCS5D01G470000.1	AT1G58684.1	21798944
AT4G02220.1	TraesCS3A01G366100.1	AT1G58983.1	21798944
AT4G02220.1	TraesCS3B01G376600.1	AT1G58983.1	21798944
AT4G02220.1	TraesCS3D01G338200.1	AT1G58983.1	21798944
AT4G02220.1	TraesCS5A01G458900.1	AT1G58983.1	21798944
AT4G02220.1	TraesCS5B01G468500.1	AT1G58983.1	21798944
AT4G02220.1	TraesCS5D01G470000.1	AT1G58983.1	21798944
AT4G02220.1	TraesCS3A01G366100.1	AT1G59359.1	21798944
AT4G02220.1	TraesCS3B01G376600.1	AT1G59359.1	21798944
AT4G02220.1	TraesCS3D01G338200.1	AT1G59359.1	21798944
AT4G02220.1	TraesCS5A01G458900.1	AT1G59359.1	21798944
AT4G02220.1	TraesCS5B01G468500.1	AT1G59359.1	21798944
AT4G02220.1	TraesCS5D01G470000.1	AT1G59359.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G317600.1	Wheat	nucleus	97.39	97.85
TraesCS4D01G189400.1	Wheat	nucleus	96.91	97.37
TraesCS4B01G188000.1	Wheat	nucleus	94.54	94.54
HORVU4Hr1G054890.2	Barley	nucleus	92.87	88.86
TraesCS4A01G116200.2	Wheat	nucleus	92.64	86.67
Os03t0300200-01	Rice	nucleus	78.15	78.52
EER92397	Sorghum	nucleus	75.06	76.14
Zm00001d031819_P001	Maize	cytosol, nucleus, plastid	33.25	74.47
Zm00001d028812_P010	Maize	nucleus	64.61	65.38
Zm00001d047689_P002	Maize	nucleus	72.92	62.53
Solyc08g076440.2.1	Tomato	nucleus	47.51	57.97
KRH37677	Soybean	nucleus	50.83	52.71
AT4G02220.1	Thale cress	nucleus	52.26	52.63
CDY22038	Canola	nucleus	51.54	52.29
Bra036286.1-P	Field mustard	nucleus	51.54	52.29
CDY52785	Canola	nucleus	51.54	52.04
PGSC0003DMT400038341	Potato	nucleus	52.02	51.65
VIT_07s0005g00910.t01	Wine grape	nucleus	49.88	50.36
KRH24906	Soybean	nucleus	46.32	48.63
GSMUA_Achr6P05130_001	Banana	mitochondrion, nucleus	59.62	47.63
TraesCS7B01G451300.1	Wheat	nucleus	39.43	45.11
KRG89015	Soybean	nucleus	10.21	43.0
Zm00001d004890_P001	Maize	cytosol	38.0	41.88
Zm00001d040569_P002	Maize	cytosol	32.54	38.16

Protein Annotations

EnsemblPlants:TraesCS1B01G115400.1	EnsemblPlantsGene:TraesCS1B01G115400	Gene3D:3.30.60.180	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	InterPro:IPR002893	InterPro:PDCD2_C	InterPro:Znf_MYND	PANTHER:PTHR12298	PANTHER:PTHR12298:SF26
PFAM:PF01753	PFAM:PF04194	PFscan:PS50865	ScanProsite:PS01360	SEG:seg	SUPFAM:SSF144232
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:135933315..135936919

Molecular Weight (calculated)

47404.4 Da

IEP (calculated)

4.798

GRAVY (calculated)

-0.584

Length

421 amino acids

Sequence
(BLAST)

001: MEPNADKLRG LRITSLDDED DDETELPNQP LPASTVTVAA AASGYDDDDE DEDEEAEVML GFLEKPKHPG LLLRHLFPSK AGGIPAWLDP VNLPTGNSSC
101: CGFCGEPLHF VLQIYAPIES NTAAFHRTLF MFMCPSMACL HRDQHEQWTR NQGNPRRSVR VFRCQLPRTN VFYSSEPPSR NNSDKPLCAG AALCHWCGTW
201: KGDKICGGCK KSRYCSEKHQ ALHWRSGHKN DCLQIINSSE ASSSVLPAVG KVPARTSWPE YQIAIDDEVD LDSDGCDEDS SKSLVMQKHG KPDDTMQSWM
301: DQFEADADNQ CWAYFQERIS RAPEQVLRYC RDPNVKPLWA LSAGRPSNPD IPSCSYCKGP LCYEFQIMPQ LLYYFGVRNE PDSLDWATIA VYTCKGSCDQ
401: NISYKEEFSW VQLYPTSISR P

Best Arabidopsis Sequence Match ( AT4G02220.1 )
(BLAST)

001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT

Arabidopsis Description

Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.