Factsheet for PGSC0003DMT400038341

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400013052
PGSC0003DMT400063904
PGSC0003DMT400079142

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02220.1	PGSC0003DMT400013052	AT1G58684.1	21798944
AT4G02220.1	PGSC0003DMT400063904	AT1G58684.1	21798944
AT4G02220.1	PGSC0003DMT400079142	AT1G58684.1	21798944
AT4G02220.1	PGSC0003DMT400013052	AT1G58983.1	21798944
AT4G02220.1	PGSC0003DMT400063904	AT1G58983.1	21798944
AT4G02220.1	PGSC0003DMT400079142	AT1G58983.1	21798944
AT4G02220.1	PGSC0003DMT400013052	AT1G59359.1	21798944
AT4G02220.1	PGSC0003DMT400063904	AT1G59359.1	21798944
AT4G02220.1	PGSC0003DMT400079142	AT1G59359.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076440.2.1	Tomato	nucleus	70.75	86.96
VIT_07s0005g00910.t01	Wine grape	nucleus	55.19	56.12
KRH37677	Soybean	nucleus	52.59	54.93
Os03t0300200-01	Rice	nucleus	52.36	52.98
Bra036286.1-P	Field mustard	nucleus	51.65	52.77
AT4G02220.1	Thale cress	nucleus	51.65	52.39
CDY22038	Canola	nucleus	50.94	52.05
TraesCS2D01G317600.1	Wheat	nucleus	51.42	52.03
TraesCS1B01G115400.1	Wheat	nucleus	51.65	52.02
TraesCS4D01G189400.1	Wheat	nucleus	51.18	51.79
EER92397	Sorghum	nucleus	50.0	51.08
CDY52785	Canola	nucleus	50.0	50.84
TraesCS4B01G188000.1	Wheat	nucleus	50.47	50.83
HORVU4Hr1G054890.2	Barley	nucleus	52.12	50.23
KRH24906	Soybean	nucleus	46.7	49.38
KRG89015	Soybean	nucleus	11.32	48.0
TraesCS4A01G116200.2	Wheat	nucleus	50.47	47.56
GSMUA_Achr3P07500_001	Banana	plastid	12.74	46.96
Os01t0578200-00	Rice	cytosol, nucleus	16.98	45.0
HORVU5Hr1G011430.1	Barley	cytosol	20.05	41.26
TraesCS7B01G451300.1	Wheat	nucleus	35.14	40.49
TraesCS5D01G058500.1	Wheat	nucleus	38.21	38.94
OQU91410	Sorghum	nucleus	41.75	38.56
TraesCS7A01G534200.1	Wheat	nucleus	36.79	37.86
TraesCS7D01G521500.1	Wheat	nucleus	25.47	36.99
HORVU5Hr1G045730.3	Barley	nucleus	25.0	34.75
Zm00001d035481_P001	Maize	nucleus	12.26	31.71

Protein Annotations

EntrezGene:102583754	Gene3D:3.30.60.180	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0046872	InterPro:IPR002893	UniProt:M1B6P3
InterPro:PDCD2_C	PFAM:PF01753	PFAM:PF04194	EnsemblPlantsGene:PGSC0003DMG400014794	PGSC:PGSC0003DMG400014794	EnsemblPlants:PGSC0003DMT400038341
ScanProsite:PS01360	PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF4	SUPFAM:SSF144232	UniParc:UPI00029526A9
RefSeq:XP_006352901.1	InterPro:Znf_MYND	SEG:seg	:	:	:

Description

Pcdc2/rp-8 [Source:PGSC_GENE;Acc:PGSC0003DMG400014794]

Coordinates

chr8:+:49084431..49089849

Molecular Weight (calculated)

47916.2 Da

IEP (calculated)

4.418

GRAVY (calculated)

-0.744

Length

424 amino acids

Sequence
(BLAST)

001: MEEEFNAGRS RGSSKRTLQI TPLDEEDQEE VQIDDSGDVD SYDDDDDDEE EEDEDKEPVG LGVLEKPENS WSLLRELFPS KAGGTPAWLD PINLPTGRSC
101: LCDICGEPLQ FMLQVYAPLT EKDSTFHRTL FLFMCTSMTC LLKDQHEQWK RNLDKQSRSV KVFCCQLPRD NSFYSSEPPR NNGKDKPSSP GAVLCGWCGT
201: WKGDKVCGGC RRVHYCSEKH QTVHWKSGHK QCCLPSSISQ DASEPSNNKT LREVQEVASK SLWPEYEIAI TDECEDKVSD DNDQVNSLIS SSRVDESIEA
301: LIDSFEGGDD KKSWASFQER ISRTPEQVLR YYRDAGAKPL WPTSSGQPSK ADIPKCTYCG GRRAFEFQVL PQILYYFGVE NDVHSLDWAT IAVYTCESSC
401: DGHVAYKEEF AWVQIASQSS TTQR

Best Arabidopsis Sequence Match ( AT4G02220.1 )
(BLAST)

001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT

Arabidopsis Description

Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.