CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93242
EER93243
EER96052
OQU76471
OQU90562

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02220.1	EER93242	AT1G58684.1	21798944
AT4G02220.1	EER93243	AT1G58684.1	21798944
AT4G02220.1	EER96052	AT1G58684.1	21798944
AT4G02220.1	OQU76471	AT1G58684.1	21798944
AT4G02220.1	OQU90562	AT1G58684.1	21798944
AT4G02220.1	EER93242	AT1G58983.1	21798944
AT4G02220.1	EER93243	AT1G58983.1	21798944
AT4G02220.1	EER96052	AT1G58983.1	21798944
AT4G02220.1	OQU76471	AT1G58983.1	21798944
AT4G02220.1	OQU90562	AT1G58983.1	21798944
AT4G02220.1	EER93242	AT1G59359.1	21798944
AT4G02220.1	EER93243	AT1G59359.1	21798944
AT4G02220.1	EER96052	AT1G59359.1	21798944
AT4G02220.1	OQU76471	AT1G59359.1	21798944
AT4G02220.1	OQU90562	AT1G59359.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0578200-00	Rice	cytosol, nucleus	23.97	68.75
TraesCS7B01G451300.1	Wheat	nucleus	47.93	59.78
TraesCS7A01G534200.1	Wheat	nucleus	50.98	56.8
TraesCS5D01G058500.1	Wheat	nucleus	51.2	56.49
HORVU5Hr1G011430.1	Barley	cytosol	24.84	55.34
TraesCS7D01G521500.1	Wheat	nucleus	33.77	53.08
HORVU5Hr1G045730.3	Barley	nucleus	34.64	52.13
EER92397	Sorghum	nucleus	46.19	51.08
Solyc08g076440.2.1	Tomato	nucleus	35.73	47.54
KRH37677	Soybean	nucleus	37.91	42.86
PGSC0003DMT400038341	Potato	nucleus	38.56	41.75
Bra036286.1-P	Field mustard	nucleus	37.25	41.2
CDY22038	Canola	nucleus	37.04	40.96
AT4G02220.1	Thale cress	nucleus	37.04	40.67
CDY52785	Canola	nucleus	36.82	40.53
VIT_07s0005g00910.t01	Wine grape	nucleus	36.38	40.05
KRG89015	Soybean	nucleus	8.5	39.0
KRH24906	Soybean	nucleus	33.55	38.4
GSMUA_Achr6P05130_001	Banana	mitochondrion, nucleus	40.96	35.67

Protein Annotations

Gene3D:3.30.60.180	MapMan:35.2	UniProt:A0A1Z5S659	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0046872	InterPro:IPR002893	EnsemblPlants:OQU91410
ProteinID:OQU91410	ProteinID:OQU91410.1	InterPro:PDCD2_C	PFAM:PF01753	PFAM:PF04194	ScanProsite:PS01360
PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF26	EnsemblPlantsGene:SORBI_3001G174800	SUPFAM:SSF144232	UniParc:UPI000B8BAE97
InterPro:Znf_MYND	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:14680184..14688689

Molecular Weight (calculated)

52185.2 Da

IEP (calculated)

4.916

GRAVY (calculated)

-0.497

Length

459 amino acids

Sequence
(BLAST)

001: MADCLDIHET VHVGGSHPRA SLFVWSQVSR KMEFNTEKLQ NLHIISNEEL EPVVVFNTDD VDPEDDEGTE PQVTVGFVEE PEGPKDSHYL LPQHFPNKAG
101: GTPAWLDPVN LPSGKSSSCD FCGNPLRFVL QVYAPIRSKE TAYHRTLFVF MCPSMACLLL DQHEQEKDRT VNPKRSVKVF RCQLPKDNAF YQLEEPEGCG
201: ETFESQCEGG MRPQLCHWCG MWKGEKWCGR CRRAYYCSKK HQELHWRTSH KSECPQVLCS PNASTSILAD GRRVFAGTSW PEYIVVDVPE KAPCFNNFDG
301: NTSELSVVHG QNKSDDMLSL MDEFEADADN RCWASFLDRI SRDPEQVLRY SGEANAKPLW AVSSGSLTND AAIPLCIYCN GPLCYEFQVM SQMLHYFHVE
401: NEPDSLDWAT IIVYTCQGSC DWNVSYKEEF VWVQLGPATR TTYHGNQDLS SRKIIRSEL

Best Arabidopsis Sequence Match ( AT4G02220.1 )
(BLAST)

001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT

Arabidopsis Description

Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.