Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G011430.1 | Barley | cytosol | 30.53 | 61.65 |
| Os01t0578200-00 | Rice | cytosol, nucleus | 22.12 | 57.5 |
| TraesCS7D01G521500.1 | Wheat | nucleus | 39.42 | 56.16 |
| OQU91410 | Sorghum | nucleus | 56.49 | 51.2 |
| TraesCS4D01G189400.1 | Wheat | nucleus | 45.43 | 45.11 |
| TraesCS2D01G317600.1 | Wheat | nucleus | 45.19 | 44.87 |
| Solyc08g076440.2.1 | Tomato | nucleus | 34.62 | 41.74 |
| Bra036286.1-P | Field mustard | nucleus | 40.38 | 40.48 |
| CDY22038 | Canola | nucleus | 40.14 | 40.24 |
| KRH37677 | Soybean | nucleus | 38.7 | 39.66 |
| CDY52785 | Canola | nucleus | 39.66 | 39.57 |
| AT4G02220.1 | Thale cress | nucleus | 39.42 | 39.23 |
| VIT_07s0005g00910.t01 | Wine grape | nucleus | 38.7 | 38.61 |
| PGSC0003DMT400038341 | Potato | nucleus | 38.94 | 38.21 |
| KRH24906 | Soybean | nucleus | 33.89 | 35.16 |
| GSMUA_Achr6P05130_001 | Banana | mitochondrion, nucleus | 42.55 | 33.59 |
| KRG89015 | Soybean | nucleus | 7.93 | 33.0 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G058500.1 | EnsemblPlantsGene:TraesCS5D01G058500 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| InterPro:IPR002893 | InterPro:PDCD2_C | InterPro:Znf_MYND | PANTHER:PTHR12298 | PANTHER:PTHR12298:SF26 | PFAM:PF04194 |
| PFscan:PS50865 | SEG:seg | SUPFAM:SSF144232 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr5D:-:55044962..55049884
Molecular Weight (calculated)
46834.3 Da
IEP (calculated)
4.156
GRAVY (calculated)
-0.478
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MELDTSTLQN LDITSHEEDP GPVAVSEGGH EGIDDHDDDE GLEEPQVTLY VAEEPKEPSD WHLLLPQHFP DKAGGAPAWL DPVNLPSGEL SRCGFCGAPL
101: RFVLQLQAPI KWKETACHRT FFVFMCPSMS CLMQDQHEQG KDRAGILRSV KVFRCQLAKN NPFYPVEEPR PEDCVDPEGC VGRVLGCCDW CGTWKGEEIC
201: SHCCEARYCS KKHQELHWHA SHKNDCCQIP GSFNDSNLPG ARKVFAGSSW PEYLIFDEVE TPYCGENSSE QLVEEGDEPD DITQLLMDQF EADDDKTCWA
301: SFIDRVEGTH QVLRYCGEEN AEPLWAESTG SLTSADIPSC IYCNAPLAYE FQVMPQLLHY FNVESDQDPL DWTTIIVYTC RDSCDKSISY KEEFVWVQLS
401: TDTISTYRAI STPAGL
101: RFVLQLQAPI KWKETACHRT FFVFMCPSMS CLMQDQHEQG KDRAGILRSV KVFRCQLAKN NPFYPVEEPR PEDCVDPEGC VGRVLGCCDW CGTWKGEEIC
201: SHCCEARYCS KKHQELHWHA SHKNDCCQIP GSFNDSNLPG ARKVFAGSSW PEYLIFDEVE TPYCGENSSE QLVEEGDEPD DITQLLMDQF EADDDKTCWA
301: SFIDRVEGTH QVLRYCGEEN AEPLWAESTG SLTSADIPSC IYCNAPLAYE FQVMPQLLHY FNVESDQDPL DWTTIIVYTC RDSCDKSISY KEEFVWVQLS
401: TDTISTYRAI STPAGL
001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT
Arabidopsis Description
Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.