CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH27864
KRH27874
KRH41719
KRH60418
KRH70352

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02220.1	KRH27864	AT1G58684.1	21798944
AT4G02220.1	KRH27874	AT1G58684.1	21798944
AT4G02220.1	KRH41719	AT1G58684.1	21798944
AT4G02220.1	KRH60418	AT1G58684.1	21798944
AT4G02220.1	KRH70352	AT1G58684.1	21798944
AT4G02220.1	KRH27864	AT1G58983.1	21798944
AT4G02220.1	KRH27874	AT1G58983.1	21798944
AT4G02220.1	KRH41719	AT1G58983.1	21798944
AT4G02220.1	KRH60418	AT1G58983.1	21798944
AT4G02220.1	KRH70352	AT1G58983.1	21798944
AT4G02220.1	KRH27864	AT1G59359.1	21798944
AT4G02220.1	KRH27874	AT1G59359.1	21798944
AT4G02220.1	KRH41719	AT1G59359.1	21798944
AT4G02220.1	KRH60418	AT1G59359.1	21798944
AT4G02220.1	KRH70352	AT1G59359.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24906	Soybean	nucleus	78.57	79.55
KRG89015	Soybean	nucleus	17.73	72.0
VIT_07s0005g00910.t01	Wine grape	nucleus	58.37	56.83
Solyc08g076440.2.1	Tomato	nucleus	47.54	55.94
AT4G02220.1	Thale cress	nucleus	54.93	53.35
Os03t0300200-01	Rice	nucleus	54.43	52.74
PGSC0003DMT400038341	Potato	nucleus	54.93	52.59
Bra036286.1-P	Field mustard	nucleus	53.69	52.53
CDY22038	Canola	nucleus	53.69	52.53
CDY52785	Canola	nucleus	53.45	52.04
EER92397	Sorghum	nucleus	52.96	51.81
TraesCS4D01G189400.1	Wheat	nucleus	52.71	51.07
TraesCS2D01G317600.1	Wheat	nucleus	52.71	51.07
TraesCS4B01G188000.1	Wheat	nucleus	52.96	51.07
TraesCS1B01G115400.1	Wheat	nucleus	52.71	50.83
HORVU4Hr1G054890.2	Barley	nucleus	53.94	49.77
TraesCS4A01G116200.2	Wheat	nucleus	53.2	48.0
GSMUA_Achr3P07500_001	Banana	plastid	13.3	46.96
Os01t0578200-00	Rice	cytosol, nucleus	18.23	46.25
HORVU5Hr1G011430.1	Barley	cytosol	20.2	39.81
TraesCS7D01G521500.1	Wheat	nucleus	28.57	39.73
TraesCS7B01G451300.1	Wheat	nucleus	35.47	39.13
TraesCS5D01G058500.1	Wheat	nucleus	39.66	38.7
TraesCS7A01G534200.1	Wheat	nucleus	38.92	38.35
OQU91410	Sorghum	nucleus	42.86	37.91
HORVU5Hr1G045730.3	Barley	nucleus	27.09	36.07
Zm00001d035481_P001	Maize	nucleus	12.56	31.1

Protein Annotations

EntrezGene:100818325	Gene3D:3.30.60.180	MapMan:35.2	EMBL:ACUP02005485	EMBL:BT098145	UniProt:C6TKD7
EnsemblPlantsGene:GLYMA_09G081700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0046872	InterPro:IPR002893	EnsemblPlants:KRH37677	ProteinID:KRH37677	ProteinID:KRH37677.1
ProteinID:KRH37678.1	InterPro:PDCD2_C	PFAM:PF01753	PFAM:PF04194	ScanProsite:PS01360	PFscan:PS50865
PANTHER:PTHR12298	PANTHER:PTHR12298:SF26	SUPFAM:SSF144232	UniParc:UPI0001B16BB7	InterPro:Znf_MYND	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:9530733..9534500

Molecular Weight (calculated)

46314.8 Da

IEP (calculated)

4.526

GRAVY (calculated)

-0.718

Length

406 amino acids

Sequence
(BLAST)

001: MDTDATGDPV DKLKAIQNDD VEYQDEDDDF DDEEEEEDDP ITLGFVDKPK NEWSLRRQYF PSKTGGVPAW LDPLNIPSGR SSVCDICGDP LQLLLQVYAP
101: TDKETTFHRM LFVFMCPSMK CLLRDQHEQW KRHPEKPSRS VKVFRCQLPR INPFYSPECP QYNESHEPAG SGAALCDWCG TWKGDKLCSS CRQARYCSEK
201: HQAMSWRTGH KTACQQMKVS SPVFGPNKSG TTSLESHKVG SKNLWPEFEI SIEDESEYNR DISEENSLAN SLISRNRNDD TMNSLMDNFK GDDDKKSWAS
301: FQERIAEAPE QVLRYYRNTN AKPIWPVSSG RPSNADIPKC SYCSGPMSCE FQILPQLLYY FGVDNEVDSL DWASIVVYAC EASCEASLPY KNEFAWVQIY
401: SLSTTL

Best Arabidopsis Sequence Match ( AT4G02220.1 )
(BLAST)

001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT

Arabidopsis Description

Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.