Factsheet for Os03t0300200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0807800-01
Os07t0207400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02220.1	Os03t0807800-01	AT1G58684.1	21798944
AT4G02220.1	Os07t0207400-01	AT1G58684.1	21798944
AT4G02220.1	Os03t0807800-01	AT1G58983.1	21798944
AT4G02220.1	Os07t0207400-01	AT1G58983.1	21798944
AT4G02220.1	Os03t0807800-01	AT1G59359.1	21798944
AT4G02220.1	Os07t0207400-01	AT1G59359.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92397	Sorghum	nucleus	82.1	82.89
Zm00001d031819_P001	Maize	cytosol, nucleus, plastid	35.56	79.26
TraesCS4B01G188000.1	Wheat	nucleus	78.76	78.38
TraesCS4D01G189400.1	Wheat	nucleus	78.28	78.28
TraesCS2D01G317600.1	Wheat	nucleus	78.28	78.28
TraesCS1B01G115400.1	Wheat	nucleus	78.52	78.15
HORVU4Hr1G054890.2	Barley	nucleus	79.0	75.23
TraesCS4A01G116200.2	Wheat	nucleus	78.28	72.89
Zm00001d028812_P010	Maize	nucleus	70.41	70.91
Zm00001d047689_P002	Maize	nucleus	80.91	69.04
Os01t0578200-00	Rice	cytosol, nucleus	23.63	61.88
Solyc08g076440.2.1	Tomato	nucleus	47.73	57.97
KRH37677	Soybean	nucleus	52.74	54.43
AT4G02220.1	Thale cress	nucleus	52.74	52.87
CDY22038	Canola	nucleus	52.03	52.53
Bra036286.1-P	Field mustard	nucleus	52.03	52.53
PGSC0003DMT400038341	Potato	nucleus	52.98	52.36
CDY52785	Canola	nucleus	52.03	52.28
VIT_07s0005g00910.t01	Wine grape	nucleus	50.6	50.84
GSMUA_Achr6P05130_001	Banana	mitochondrion, nucleus	61.58	48.96
KRH24906	Soybean	nucleus	46.54	48.63
Zm00001d004890_P001	Maize	cytosol	40.57	44.5
KRG89015	Soybean	nucleus	10.26	43.0
Zm00001d040569_P002	Maize	cytosol	35.08	40.95

Protein Annotations

Gene3D:3.30.60.180	MapMan:35.2	EntrezGene:4332566	ProteinID:ABF95476.1	EMBL:AK102070	ProteinID:BAF11769.1
ProteinID:BAS83759.1	ProteinID:EAZ26613.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0046872	EMBL:HQ324802	InterPro:IPR002893	EnsemblPlantsGene:Os03g0300200
EnsemblPlants:Os03t0300200-01	InterPro:PDCD2_C	PFAM:PF01753	PFAM:PF04194	ScanProsite:PS01360	PFscan:PS50865
PANTHER:PTHR12298	PANTHER:PTHR12298:SF26	UniProt:Q10MP9	SUPFAM:SSF144232	UniParc:UPI0000DB4D40	RefSeq:XP_015631104.1
InterPro:Znf_MYND	SEG:seg	:	:	:	:

Description

Similar to Ubiquitin-specific protease 16. (Os03t0300200-01)

Coordinates

chr3:-:10551935..10556107

Molecular Weight (calculated)

46914.9 Da

IEP (calculated)

5.105

GRAVY (calculated)

-0.603

Length

419 amino acids

Sequence
(BLAST)

001: MESNAEKLRG LTITSLDEED DEPELPHRSP PASGGGGGGG AGYEDDDEEE EEEAEVTLGF LEKPKHPGLL LRHLFPSKAG GIPAWLDPVN LPSGNSRCCG
101: FCGEPLQFVL QIYAPIEDNA ASFHRTLFMF MCPSMACLLR DQHDQWKHRQ GNPCRSVKVF RCQLPRSNAF YSSEPPKHND SDKPLCPGAP VCHWCGTWKG
201: DKLCSSCKKA RYCSEKHQTL HWRSGHKSDC LQLISSSEAS SSIFPAVGKV PASKSWPEYE IAIDYEGAFN SDSCDESNSK SLVMQRPGKP DDMMQSWMDQ
301: FEADADNKCW ASFQERVSRA PKQVLRYCRE ENAKPLWALS AGCPSNADIP SCSYCRGPLC YEFQIMPQLL YYFGVKNEPD SLDWATIVVY TCKGSCDQNV
401: SYKEEFAWVQ LYPTTTTRS

Best Arabidopsis Sequence Match ( AT4G02220.1 )
(BLAST)

001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT

Arabidopsis Description

Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.