Factsheet for GSMUA_Achr6P05130_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0300200-01	Rice	nucleus	48.96	61.58
EER92397	Sorghum	nucleus	47.82	60.72
TraesCS4B01G188000.1	Wheat	nucleus	47.82	59.86
TraesCS1B01G115400.1	Wheat	nucleus	47.63	59.62
TraesCS4D01G189400.1	Wheat	nucleus	47.25	59.43
TraesCS2D01G317600.1	Wheat	nucleus	47.06	59.19
GSMUA_Achr3P07500_001	Banana	plastid	12.71	58.26
HORVU4Hr1G054890.2	Barley	nucleus	48.58	58.18
TraesCS4A01G116200.2	Wheat	nucleus	48.01	56.22
Zm00001d031819_P001	Maize	cytosol, nucleus, plastid	19.35	54.26
Zm00001d028812_P010	Maize	nucleus	40.04	50.72
Zm00001d047689_P002	Maize	nucleus	46.68	50.1
Os01t0578200-00	Rice	cytosol, nucleus	14.8	48.75
TraesCS5D01G058500.1	Wheat	nucleus	33.59	42.55
HORVU5Hr1G011430.1	Barley	cytosol	16.51	42.23
TraesCS7B01G451300.1	Wheat	nucleus	29.41	42.12
OQU91410	Sorghum	nucleus	35.67	40.96
TraesCS7A01G534200.1	Wheat	nucleus	31.31	40.05
TraesCS7D01G521500.1	Wheat	nucleus	22.01	39.73
HORVU5Hr1G045730.3	Barley	nucleus	22.01	38.03
Zm00001d004890_P001	Maize	cytosol	23.15	31.94
Zm00001d040569_P002	Maize	cytosol	19.92	29.25

Protein Annotations

Gene3D:3.30.60.180	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr6G05130_001	EnsemblPlants:GSMUA_Achr6P05130_001	EnsemblPlants:GSMUA_Achr6T05130_001
InterPro:IPR002893	UniProt:M0T4B1	InterPro:PDCD2_C	PFAM:PF01753	PFAM:PF04194	ScanProsite:PS01360
PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF26	SUPFAM:SSF144232	UniParc:UPI0002957328	InterPro:Znf_MYND
SEG:seg	:	:	:	:	:

Description

Putative Programmed cell death protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G05130_001]

Coordinates

chr6:-:3477157..3481232

Molecular Weight (calculated)

59854.2 Da

IEP (calculated)

7.079

GRAVY (calculated)

-0.436

Length

527 amino acids

Sequence
(BLAST)

001: MYRICYIGRA EPRRTESPTH RVALTTRLAF RGSECRLSVP RRRLFFPRCR LSSSAVTSSV ASSPSLRPRH CRVSPSASLY PSLHIGTRLL LLLLLPVCSF
101: SLSDRESTTA LGCSGWMGSN MNDMKSLQET NLDEEGDQEF ELEDVDDGDE EEEVEEYVTL GLVEKPKNPK FLLRHLFPSK AGGVPAWLDP VDLPQEKSRI
201: CGFCGEPLQF LLQIYAPISE ESSTFHRILY VFMCPSMSCL LRDQHEQWKR REDNPCRSVK VFRCQLPRCN PFYSSEPPKH DGIDKPLTVG AALCSWCGTW
301: KGEKVCSSCR RARYCSEKHQ ALHWKSGHRN QCRQIVNYSE TSSSSPDSSS NRLPAVGKVA CSTLWPEYEI IIEDECAFDT EAFEDNNCAT SLVPKNMKTD
401: DSYQFMLDKL EADEKKKTWA SFQERIAKCP KQVLRYCRDP KAKPLWPLSI GCPSVANIPK CNYCNGPICY EFQIMPQLLF YFGVRNDPDS LDWGTIAVYT
501: CSASCGSSIS YKEEFAWVQL YPTAPMT

Best Arabidopsis Sequence Match ( AT4G02220.1 )
(BLAST)

001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT

Arabidopsis Description

Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.