CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93242
EER93243
EER96052
OQU76471
OQU90562

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02220.1	EER93242	AT1G58684.1	21798944
AT4G02220.1	EER93243	AT1G58684.1	21798944
AT4G02220.1	EER96052	AT1G58684.1	21798944
AT4G02220.1	OQU76471	AT1G58684.1	21798944
AT4G02220.1	OQU90562	AT1G58684.1	21798944
AT4G02220.1	EER93242	AT1G58983.1	21798944
AT4G02220.1	EER93243	AT1G58983.1	21798944
AT4G02220.1	EER96052	AT1G58983.1	21798944
AT4G02220.1	OQU76471	AT1G58983.1	21798944
AT4G02220.1	OQU90562	AT1G58983.1	21798944
AT4G02220.1	EER93242	AT1G59359.1	21798944
AT4G02220.1	EER93243	AT1G59359.1	21798944
AT4G02220.1	EER96052	AT1G59359.1	21798944
AT4G02220.1	OQU76471	AT1G59359.1	21798944
AT4G02220.1	OQU90562	AT1G59359.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0300200-01	Rice	nucleus	82.89	82.1
Zm00001d047689_P002	Maize	nucleus	92.29	78.0
TraesCS4B01G188000.1	Wheat	nucleus	76.63	75.53
TraesCS2D01G317600.1	Wheat	nucleus	75.9	75.18
TraesCS1B01G115400.1	Wheat	nucleus	76.14	75.06
TraesCS4D01G189400.1	Wheat	nucleus	75.42	74.7
HORVU4Hr1G054890.2	Barley	nucleus	75.9	71.59
TraesCS4A01G116200.2	Wheat	nucleus	76.14	70.22
Solyc08g076440.2.1	Tomato	nucleus	46.75	56.23
Bra036286.1-P	Field mustard	nucleus	53.49	53.49
CDY22038	Canola	nucleus	53.25	53.25
AT4G02220.1	Thale cress	nucleus	53.49	53.11
KRH37677	Soybean	nucleus	51.81	52.96
CDY52785	Canola	nucleus	53.01	52.76
VIT_07s0005g00910.t01	Wine grape	nucleus	51.81	51.56
PGSC0003DMT400038341	Potato	nucleus	51.08	50.0
KRH24906	Soybean	nucleus	46.75	48.38
GSMUA_Achr6P05130_001	Banana	mitochondrion, nucleus	60.72	47.82
OQU91410	Sorghum	nucleus	51.08	46.19
KRG89015	Soybean	nucleus	10.36	43.0

Protein Annotations

Gene3D:3.30.60.180	MapMan:35.2	UniProt:C5WNE5	EnsemblPlants:EER92397	ProteinID:EER92397	ProteinID:EER92397.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0046872	InterPro:IPR002893	ProteinID:KXG39555.1	InterPro:PDCD2_C	PFAM:PF01753	PFAM:PF04194
ScanProsite:PS01360	PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF26	EnsemblPlantsGene:SORBI_3001G401500	SUPFAM:SSF144232
UniParc:UPI0001A82B9A	RefSeq:XP_002465399.1	InterPro:Znf_MYND	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:68698512..68703157

Molecular Weight (calculated)

46392.5 Da

IEP (calculated)

5.763

GRAVY (calculated)

-0.515

Length

415 amino acids

Sequence
(BLAST)

001: MESSAKKLSS LRITSLDDDD DETEVPHQPP PAGPSAAAAD YEDDDDEDEE VEVTLGVLSK PKHPGLLLRH LFPSKAGGIP AWLDPVNLPS GKSSCCGFCG
101: EPLQFVLQIY APIEDNVAAF HRTLFVFMCP SMACLLRDQH EQWKHKHGNP CRSVKVFRCQ LPRSNTFYSA QPPKYDGSDK PLCPGAPVCH WCGTWKGDKI
201: CSSCKKARYC SEKHQALHWR TGHKNDCLQI ISSSAASNSV LPAVGKVPAS TSWLEFEIKI DYEGTFDSDS GDENNSKSLV MQRHGKPDAM MQSWMDQFEA
301: DADNKCWASF QERVSREPKQ VLRYCREPNA KPLWALSSGC PSNADIPSCS YCRGPLCYEF QLMPQLLYFF GVGNQPDSLD WATIAVYTCQ GSCDQSVSYK
401: EEFAWVQLYP TTTRR

Best Arabidopsis Sequence Match ( AT4G02220.1 )
(BLAST)

001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT

Arabidopsis Description

Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.