Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G41840.1 | EER92397 | AT4G02220.1 | 21798944 |
| AT2G41840.1 | OQU91410 | AT4G02220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93243 | Sorghum | cytosol | 99.64 | 99.64 |
| Zm00001d034550_P001 | Maize | plasma membrane, plastid | 97.08 | 97.08 |
| Zm00001d013034_P001 | Maize | plastid | 97.08 | 97.08 |
| EER96052 | Sorghum | cytosol | 93.43 | 91.76 |
| Os07t0207400-01 | Rice | cytosol, golgi, nucleus, plasma membrane | 54.38 | 90.3 |
| GSMUA_Achr1P22950_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 77.37 | 83.46 |
| KRH60418 | Soybean | mitochondrion, nucleus | 82.48 | 83.09 |
| KRH70352 | Soybean | endoplasmic reticulum, nucleus | 82.48 | 82.18 |
| KRH27874 | Soybean | nucleus | 82.48 | 82.18 |
| KRH27864 | Soybean | nucleus | 82.48 | 82.18 |
| VIT_08s0007g08370.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 81.02 | 81.32 |
| KRH41719 | Soybean | nucleus | 41.24 | 81.3 |
| GSMUA_AchrUn_... | Banana | cytosol | 63.87 | 80.65 |
| GSMUA_Achr2P07800_001 | Banana | cytosol | 64.96 | 80.54 |
| GSMUA_Achr1P12890_001 | Banana | cytosol | 64.23 | 80.37 |
| AT3G57490.1 | Thale cress | cytosol | 79.56 | 78.99 |
| AT2G41840.1 | Thale cress | cytosol | 82.12 | 78.95 |
| Solyc04g063290.2.1 | Tomato | nucleus | 80.66 | 78.93 |
| PGSC0003DMT400063904 | Potato | cytosol | 80.29 | 78.57 |
| Solyc04g074300.2.1 | Tomato | nucleus | 79.93 | 78.21 |
| Bra004654.1-P | Field mustard | cytosol | 81.02 | 77.89 |
| Bra000242.1-P | Field mustard | cytosol | 79.93 | 77.66 |
| PGSC0003DMT400079142 | Potato | cytosol | 73.36 | 77.61 |
| Bra016913.1-P | Field mustard | cytosol | 80.66 | 77.54 |
| AT1G58684.1 | Thale cress | cytosol | 80.29 | 77.46 |
| AT1G58983.1 | Thale cress | cytosol | 80.29 | 77.46 |
| AT1G59359.1 | Thale cress | cytosol | 80.29 | 77.46 |
| AT1G58380.1 | Thale cress | cytosol | 79.2 | 76.41 |
| Bra035439.1-P | Field mustard | cytosol | 77.74 | 76.07 |
| OQU76471 | Sorghum | cytosol | 51.82 | 64.84 |
| GSMUA_Achr8P31470_001 | Banana | cytosol | 35.77 | 63.64 |
| PGSC0003DMT400013052 | Potato | cytosol | 22.26 | 56.48 |
| OQU90562 | Sorghum | cytosol, plastid | 31.75 | 45.08 |
| Bra027857.1-P | Field mustard | cytosol, mitochondrion, nucleus | 7.3 | 31.25 |
Protein Annotations
| MapMan:17.1.3.1.2 | Gene3D:3.30.160.770 | Gene3D:3.30.230.10 | EntrezGene:8081204 | UniProt:C5WW47 | EnsemblPlants:EER93242 |
| ProteinID:EER93242 | ProteinID:EER93242.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0015935 | GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030529 | InterPro:IPR013810 |
| InterPro:IPR014721 | PFAM:PF00333 | PFAM:PF03719 | ScanProsite:PS00585 | PFscan:PS50881 | PANTHER:PTHR13718 |
| PANTHER:PTHR13718:SF74 | InterPro:Ribosomal_S5 | InterPro:Ribosomal_S5_C | InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Ribosomal_S5_D2-typ_fold_subgr | InterPro:Ribosomal_S5_N |
| InterPro:Ribosomal_S5_N_CS | InterPro:Ribosomal_S5_euk/arc | EnsemblPlantsGene:SORBI_3001G046100 | SUPFAM:SSF54211 | SUPFAM:SSF54768 | unigene:Sbi.11677 |
| TIGRFAMs:TIGR01020 | UniParc:UPI0001A82A6F | RefSeq:XP_002466244.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr1:-:3400997..3402589
Molecular Weight (calculated)
29805.4 Da
IEP (calculated)
10.931
GRAVY (calculated)
-0.347
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERGGERGG ERGGFGRGFG RGGRGDRGGR RGGRRGPRQE EEKWVPVTKL GRLVKESKIN KIEEIYLHSL PVKEHQIIET LVPGLKDEVM KITPVQKQTR
101: AGQRTRFKAF VVVGDGDGHV GLGVKCAKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGQP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA RVPKKVLQFA
201: GIEDVFTSSR GSTKTLGNFV KATFDCLMKT YGFLTPEFWT QTKFSMTPFQ QFTDLLGKPT KGLVLEAPTE TAEA
101: AGQRTRFKAF VVVGDGDGHV GLGVKCAKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGQP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA RVPKKVLQFA
201: GIEDVFTSSR GSTKTLGNFV KATFDCLMKT YGFLTPEFWT QTKFSMTPFQ QFTDLLGKPT KGLVLEAPTE TAEA
001: MAERGVERGG DRGDFGRGFG GRGGGRGGPR GRGRRAGRAP EEEKWVPVTK LGRLVKEGKI TKIEQIYLHS LPVKEYQIID LLVGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE
Arabidopsis Description
RPS2D40S ribosomal protein S2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCM3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.