Factsheet for Bra016913.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14790	Canola	cytosol	100.0	100.0
CDY06903	Canola	cytosol	89.47	99.61
Bra004654.1-P	Field mustard	cytosol	95.79	95.79
Bra000242.1-P	Field mustard	cytosol	94.04	95.04
Bra035439.1-P	Field mustard	cytosol	85.96	87.5
KRH60418	Soybean	mitochondrion, nucleus	80.7	84.56
KRH70352	Soybean	endoplasmic reticulum, nucleus	80.35	83.27
KRH27864	Soybean	nucleus	80.35	83.27
KRH27874	Soybean	nucleus	80.35	83.27
GSMUA_Achr1P22950_001	Banana	cytosol, endoplasmic reticulum, nucleus	74.04	83.07
AT3G57490.1	Thale cress	cytosol	80.35	82.97
KRH41719	Soybean	nucleus	40.35	82.73
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	78.95	82.42
Os03t0807800-01	Rice	nucleus	78.95	82.12
Os07t0207400-01	Rice	cytosol, golgi, nucleus, plasma membrane	47.37	81.82
PGSC0003DMT400063904	Potato	cytosol	80.0	81.43
Solyc04g074300.2.1	Tomato	nucleus	79.65	81.07
Solyc04g063290.2.1	Tomato	nucleus	79.65	81.07
EER93242	Sorghum	cytosol	77.54	80.66
Zm00001d034550_P001	Maize	plasma membrane, plastid	77.54	80.66
Zm00001d013034_P001	Maize	plastid	77.54	80.66
EER93243	Sorghum	cytosol	77.54	80.66
TraesCS5B01G468500.1	Wheat	plastid	77.19	80.29
GSMUA_AchrUn_...	Banana	cytosol	61.05	80.18
TraesCS5A01G458900.1	Wheat	cytosol	76.84	79.64
PGSC0003DMT400079142	Potato	cytosol	72.28	79.54
GSMUA_Achr1P12890_001	Banana	cytosol	61.05	79.45
Zm00001d019147_P001	Maize	plasma membrane, plastid	77.54	79.21
GSMUA_Achr2P07800_001	Banana	cytosol	61.4	79.19
EER96052	Sorghum	cytosol	77.19	78.85
TraesCS5D01G470000.1	Wheat	extracellular, golgi, plastid, unclear	77.19	78.85
TraesCS3A01G366100.1	Wheat	golgi	76.84	78.78
TraesCS3B01G376600.1	Wheat	nucleus	75.79	77.7
TraesCS3D01G338200.1	Wheat	cytosol	75.79	77.7
HORVU3Hr1G086050.1	Barley	cytosol	75.79	77.7
HORVU5Hr1G109910.2	Barley	cytosol	67.72	63.7
GSMUA_Achr8P31470_001	Banana	cytosol	32.63	60.39
Bra027857.1-P	Field mustard	cytosol, mitochondrion, nucleus	12.98	57.81
OQU76471	Sorghum	cytosol	43.16	56.16
PGSC0003DMT400013052	Potato	cytosol	20.7	54.63
OQU90562	Sorghum	cytosol, plastid	28.07	41.45

Protein Annotations

MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	EnsemblPlantsGene:Bra016913	EnsemblPlants:Bra016913.1	EnsemblPlants:Bra016913.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538
GO:GO:0030529	InterPro:IPR013810	InterPro:IPR014721	UniProt:M4DK84	PFAM:PF00333	PFAM:PF03719
ScanProsite:PS00585	PFscan:PS50881	PANTHER:PTHR13718	PANTHER:PTHR13718:SF79	InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_N_CS	InterPro:Ribosomal_S5_euk/arc	SUPFAM:SSF54211
SUPFAM:SSF54768	TIGRFAMs:TIGR01020	UniParc:UPI0002543704	SEG:seg	:	:

Description

AT1G58380 (E=1e-119) XW6 | XW6; structural constituent of ribosome

Coordinates

chrA04:-:17633453..17635066

Molecular Weight (calculated)

30763.4 Da

IEP (calculated)

10.831

GRAVY (calculated)

-0.429

Length

285 amino acids

Sequence
(BLAST)

001: MAERGGERGA ERGGDRGGFG RGFGGGRGDR GGRGGPRGRG GRRGGRPTEE EKWTPVTKLG RLVQAGKIQK LEQIYLHSLP VKEYQIIDLL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDTNGHV GLGVKCSKEV ATAIRGGIIL AKLSVIPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGAGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETSFKKSPYQ EYTDLLAEKG TATKAITEVE DQAAS

Best Arabidopsis Sequence Match ( AT1G58983.1 )
(BLAST)

001: MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA

Arabidopsis Description

RPS2B40S ribosomal protein S2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.