Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G468500.1 | Wheat | plastid | 98.91 | 99.27 |
| TraesCS5D01G470000.1 | Wheat | extracellular, golgi, plastid, unclear | 99.27 | 97.85 |
| TraesCS3A01G366100.1 | Wheat | golgi | 96.73 | 95.68 |
| Os03t0807800-01 | Rice | nucleus | 92.36 | 92.7 |
| GSMUA_Achr1P22950_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 76.36 | 82.68 |
| VIT_08s0007g08370.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 81.09 | 81.69 |
| KRH60418 | Soybean | mitochondrion, nucleus | 80.73 | 81.62 |
| KRH41719 | Soybean | nucleus | 41.09 | 81.3 |
| KRH70352 | Soybean | endoplasmic reticulum, nucleus | 81.09 | 81.09 |
| KRH27874 | Soybean | nucleus | 81.09 | 81.09 |
| KRH27864 | Soybean | nucleus | 81.09 | 81.09 |
| GSMUA_AchrUn_... | Banana | cytosol | 63.27 | 80.18 |
| HORVU5Hr1G109910.2 | Barley | cytosol | 87.27 | 79.21 |
| GSMUA_Achr2P07800_001 | Banana | cytosol | 63.64 | 79.19 |
| GSMUA_Achr1P12890_001 | Banana | cytosol | 62.91 | 79.0 |
| AT3G57490.1 | Thale cress | cytosol | 79.27 | 78.99 |
| Solyc04g063290.2.1 | Tomato | nucleus | 80.36 | 78.93 |
| PGSC0003DMT400063904 | Potato | cytosol | 80.0 | 78.57 |
| Solyc04g074300.2.1 | Tomato | nucleus | 79.64 | 78.21 |
| AT2G41840.1 | Thale cress | cytosol | 80.73 | 77.89 |
| PGSC0003DMT400079142 | Potato | cytosol | 73.09 | 77.61 |
| Bra016913.1-P | Field mustard | cytosol | 79.64 | 76.84 |
| Bra004654.1-P | Field mustard | cytosol | 79.64 | 76.84 |
| Bra000242.1-P | Field mustard | cytosol | 78.55 | 76.6 |
| AT1G58684.1 | Thale cress | cytosol | 78.18 | 75.7 |
| AT1G58983.1 | Thale cress | cytosol | 78.18 | 75.7 |
| AT1G59359.1 | Thale cress | cytosol | 78.18 | 75.7 |
| Bra035439.1-P | Field mustard | cytosol | 76.73 | 75.36 |
| AT1G58380.1 | Thale cress | cytosol | 77.45 | 75.0 |
| GSMUA_Achr8P31470_001 | Banana | cytosol | 36.0 | 64.29 |
| PGSC0003DMT400013052 | Potato | cytosol | 23.27 | 59.26 |
| Bra027857.1-P | Field mustard | cytosol, mitochondrion, nucleus | 8.36 | 35.94 |
Protein Annotations
| MapMan:17.1.3.1.2 | Gene3D:3.30.160.770 | Gene3D:3.30.230.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0015935 | GO:GO:0019538 | InterPro:IPR013810 | InterPro:IPR014721 | PFAM:PF00333 |
| PFAM:PF03719 | ScanProsite:PS00585 | PFscan:PS50881 | PANTHER:PTHR13718 | PANTHER:PTHR13718:SF74 | InterPro:Ribosomal_S5 |
| InterPro:Ribosomal_S5_C | InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Ribosomal_S5_D2-typ_fold_subgr | InterPro:Ribosomal_S5_N | InterPro:Ribosomal_S5_N_CS | InterPro:Ribosomal_S5_euk/arc |
| SUPFAM:SSF54211 | SUPFAM:SSF54768 | TIGRFAMs:TIGR01020 | EnsemblPlantsGene:TraesCS5A01G458900 | EnsemblPlants:TraesCS5A01G458900.1 | SEG:seg |
Description
No Description!
Coordinates
chr5A:+:639181378..639182858
Molecular Weight (calculated)
30029.8 Da
IEP (calculated)
10.874
GRAVY (calculated)
-0.329
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MADRGGERGV GERGGFGRGF GRGGRGDRGG RRGGRRGPRQ EEEKWVPVTK LGRLVKEGRF TKMEEIYLHS LPVKEHQIVE TLCPGLKDEV MKITPVQKQT
101: RAGQRTRFKA FVVVGDSNGH VGLGVKCAKE VATAIRGAII LAKLSIVPVR RGYWGNKIGL PHTVPCKVTG KCGSVTVRMV PAPRGSGIVA ARVPKKVLQF
201: AGIDDVFTSS RGSTKTLGNF VKATFDCLMK TYGFLTPDFW RETTFTKAPY QEFTDILAKP TKALMLDAPA EKIEA
101: RAGQRTRFKA FVVVGDSNGH VGLGVKCAKE VATAIRGAII LAKLSIVPVR RGYWGNKIGL PHTVPCKVTG KCGSVTVRMV PAPRGSGIVA ARVPKKVLQF
201: AGIDDVFTSS RGSTKTLGNF VKATFDCLMK TYGFLTPDFW RETTFTKAPY QEFTDILAKP TKALMLDAPA EKIEA
001: MAERGVERGG DRGDFGRGFG GRGGGRGGPR GRGRRAGRAP EEEKWVPVTK LGRLVKEGKI TKIEQIYLHS LPVKEYQIID LLVGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE
Arabidopsis Description
RPS2D40S ribosomal protein S2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCM3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.