Factsheet for VIT_08s0007g08370.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g00910.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	VIT_07s0005g00910.t01	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60418	Soybean	mitochondrion, nucleus	87.18	87.5
GSMUA_Achr1P22950_001	Banana	cytosol, endoplasmic reticulum, nucleus	79.85	85.83
GSMUA_AchrUn_...	Banana	cytosol	68.13	85.71
KRH70352	Soybean	endoplasmic reticulum, nucleus	86.08	85.45
KRH27874	Soybean	nucleus	86.08	85.45
KRH27864	Soybean	nucleus	86.08	85.45
Os07t0207400-01	Rice	cytosol, golgi, nucleus, plasma membrane	51.28	84.85
Solyc04g063290.2.1	Tomato	nucleus	86.81	84.64
PGSC0003DMT400063904	Potato	cytosol	86.45	84.29
Solyc04g074300.2.1	Tomato	nucleus	86.45	84.29
GSMUA_Achr2P07800_001	Banana	cytosol	68.13	84.16
Os03t0807800-01	Rice	nucleus	83.88	83.58
KRH41719	Soybean	nucleus	42.49	83.45
PGSC0003DMT400079142	Potato	cytosol	78.75	83.01
GSMUA_Achr1P12890_001	Banana	cytosol	66.3	82.65
CDY06903	Canola	cytosol	77.29	82.42
Zm00001d013034_P001	Maize	plastid	81.69	81.39
TraesCS5A01G458900.1	Wheat	cytosol	81.69	81.09
EER93242	Sorghum	cytosol	81.32	81.02
EER93243	Sorghum	cytosol	81.32	81.02
Zm00001d034550_P001	Maize	plasma membrane, plastid	81.32	81.02
TraesCS5B01G468500.1	Wheat	plastid	81.32	81.02
CDY45881	Canola	cytosol	81.32	80.43
Zm00001d019147_P001	Maize	plasma membrane, plastid	82.05	80.29
EER96052	Sorghum	cytosol	81.69	79.93
AT3G57490.1	Thale cress	cytosol	80.59	79.71
TraesCS5D01G470000.1	Wheat	extracellular, golgi, plastid, unclear	81.32	79.57
TraesCS3B01G376600.1	Wheat	nucleus	80.95	79.5
TraesCS3A01G366100.1	Wheat	golgi	80.95	79.5
TraesCS3D01G338200.1	Wheat	cytosol	80.59	79.14
HORVU3Hr1G086050.1	Barley	cytosol	80.59	79.14
CDY14790	Canola	cytosol	82.42	78.95
CDX79908	Canola	cytosol	82.42	78.95
Bra016913.1-P	Field mustard	cytosol	82.42	78.95
Bra004654.1-P	Field mustard	cytosol	82.05	78.6
Bra035439.1-P	Field mustard	cytosol	80.59	78.57
CDY44553	Canola	cytosol	80.59	78.57
CDY22542	Canola	cytosol	80.95	78.37
AT2G41840.1	Thale cress	cytosol	81.32	77.89
Bra000242.1-P	Field mustard	cytosol	80.22	77.66
AT1G58684.1	Thale cress	cytosol	80.22	77.11
AT1G59359.1	Thale cress	cytosol	80.22	77.11
AT1G58983.1	Thale cress	cytosol	80.22	77.11
AT1G58380.1	Thale cress	cytosol	80.22	77.11
CDY42063	Canola	mitochondrion	26.01	73.2
CDY35397	Canola	cytosol, extracellular	80.22	72.28
GSMUA_Achr8P31470_001	Banana	cytosol	37.36	66.23
HORVU5Hr1G109910.2	Barley	cytosol	72.89	65.68
OQU76471	Sorghum	cytosol	47.62	59.36
PGSC0003DMT400013052	Potato	cytosol	23.08	58.33
CDY65554	Canola	cytosol	9.16	46.3
OQU90562	Sorghum	cytosol, plastid	29.3	41.45
Bra027857.1-P	Field mustard	cytosol, mitochondrion, nucleus	8.42	35.94

Protein Annotations

EntrezGene:100260573	wikigene:100260573	MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	UniProt:A5BIQ8
EMBL:AM460819	ProteinID:CAN79008	ProteinID:CAN79008.1	ProteinID:CCB55137	ProteinID:CCB55137.1	EMBL:FN595991
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935
GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	InterPro:IPR013810	InterPro:IPR014721	EntrezGene:LOC100260573
wikigene:LOC100260573	PFAM:PF00333	PFAM:PF03719	ScanProsite:PS00585	PFscan:PS50881	PANTHER:PTHR13718
PANTHER:PTHR13718:SF79	InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N
InterPro:Ribosomal_S5_N_CS	InterPro:Ribosomal_S5_euk/arc	SUPFAM:SSF54211	SUPFAM:SSF54768	TIGR:TC52018	TIGRFAMs:TIGR01020
UniParc:UPI0001524553	ArrayExpress:VIT_08s0007g08370	EnsemblPlantsGene:VIT_08s0007g08370	EnsemblPlants:VIT_08s0007g08370.t01	unigene:Vvi.11921	unigene:Vvi.7153
RefSeq:XP_002283767	RefSeq:XP_002283767.1	RefSeq:XP_002283793	RefSeq:XP_002283793.1	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:21712482..21714990

Molecular Weight (calculated)

29975.5 Da

IEP (calculated)

10.888

GRAVY (calculated)

-0.412

Length

273 amino acids

Sequence
(BLAST)

001: MAERGGGGER GGFGRGFGRG GRGDRGRGGR RRSAGRREEE EKWVPVTKLG RLVKDGKIRT VEEIYLHSLP IKEHQIIDTL VGPSLKDEVM KIMPVQKQTR
101: AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVIPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGAGIVAA RVPKKVLQFA
201: GIEDVFTSSR GSTKTLGNFV KATFDCLLKT YAYLTPDFWR ETRYTKSPFQ EHTDLLAKPT KAIYQDDVER VEA

Best Arabidopsis Sequence Match ( AT3G57490.1 )
(BLAST)

001: MAERGVERGG DRGDFGRGFG GRGGGRGGPR GRGRRAGRAP EEEKWVPVTK LGRLVKEGKI TKIEQIYLHS LPVKEYQIID LLVGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE

Arabidopsis Description

RPS2D40S ribosomal protein S2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCM3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.