Factsheet for Zm00001d019147_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d035481_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	Zm00001d035481_P001	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96052	Sorghum	cytosol	97.85	97.85
Zm00001d034550_P001	Maize	plasma membrane, plastid	92.83	94.53
Zm00001d013034_P001	Maize	plastid	92.83	94.53
Os07t0207400-01	Rice	cytosol, golgi, nucleus, plasma membrane	54.48	92.12
GSMUA_Achr1P22950_001	Banana	cytosol, endoplasmic reticulum, nucleus	76.34	83.86
KRH41719	Soybean	nucleus	41.22	82.73
KRH60418	Soybean	mitochondrion, nucleus	80.29	82.35
KRH70352	Soybean	endoplasmic reticulum, nucleus	81.0	82.18
KRH27874	Soybean	nucleus	81.0	82.18
KRH27864	Soybean	nucleus	81.0	82.18
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	80.29	82.05
GSMUA_Achr2P07800_001	Banana	cytosol	63.44	80.09
GSMUA_Achr1P12890_001	Banana	cytosol	62.72	79.91
GSMUA_AchrUn_...	Banana	cytosol	62.01	79.72
Bra035439.1-P	Field mustard	cytosol	78.49	78.21
Solyc04g063290.2.1	Tomato	nucleus	78.49	78.21
AT3G57490.1	Thale cress	cytosol	77.06	77.9
AT2G41840.1	Thale cress	cytosol	79.57	77.89
PGSC0003DMT400063904	Potato	cytosol	78.14	77.86
Bra016913.1-P	Field mustard	cytosol	79.21	77.54
Bra004654.1-P	Field mustard	cytosol	79.21	77.54
Solyc04g074300.2.1	Tomato	nucleus	77.78	77.5
Bra000242.1-P	Field mustard	cytosol	78.14	77.31
PGSC0003DMT400079142	Potato	cytosol	71.33	76.83
AT1G58684.1	Thale cress	cytosol	78.14	76.76
AT1G58983.1	Thale cress	cytosol	78.14	76.76
AT1G59359.1	Thale cress	cytosol	78.14	76.76
AT1G58380.1	Thale cress	cytosol	76.7	75.35
OQU76471	Sorghum	cytosol	53.76	68.49
GSMUA_Achr8P31470_001	Banana	cytosol	34.41	62.34
PGSC0003DMT400013052	Potato	cytosol	22.22	57.41
Bra027857.1-P	Field mustard	cytosol, mitochondrion, nucleus	7.89	34.38

Protein Annotations

EntrezGene:100283974	MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	UniProt:B6TNR8	EMBL:EU966633
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538
GO:GO:0030529	InterPro:IPR013810	InterPro:IPR014721	ProteinID:ONM52348.1	PFAM:PF00333	PFAM:PF03719
ScanProsite:PS00585	PFscan:PS50881	PANTHER:PTHR13718	PANTHER:PTHR13718:SF74	InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_N_CS	InterPro:Ribosomal_S5_euk/arc	SUPFAM:SSF54211
SUPFAM:SSF54768	TIGRFAMs:TIGR01020	UniParc:UPI0000E64961	EnsemblPlantsGene:Zm00001d019147	EnsemblPlants:Zm00001d019147_P001	EnsemblPlants:Zm00001d019147_T001
SEG:seg	:	:	:	:	:

Description

40S ribosomal protein S2

Coordinates

chr7:+:19140215..19142574

Molecular Weight (calculated)

30359.0 Da

IEP (calculated)

10.812

GRAVY (calculated)

-0.393

Length

279 amino acids

Sequence
(BLAST)

001: MAERGGERGG ERGGERGGFG RGFGRGGRGD RGGRRGGRRG GRQQEEEKWV PVTKLGRLVK ENRINKIEEI YLHSLPVKEH QIVETLVPGL KDEVMKITPV
101: QKQTRAGQRT RFKAFVVVGD GDGHVGLGVK CAKEVATAIR GAIILAKLSV VPVRRGYWGN KIGQPHTVPC KVTGKCGSVT VRMVPAPRGS GIVAARVPKK
201: VLQFAGIEDV FTSSRGSTKT LGNFVKATFD CLMKTYGFLT PEFWAETKYA KTPFQEFTDL LAKPTKGLLI EAPTETVEA

Best Arabidopsis Sequence Match ( AT1G58983.1 )
(BLAST)

001: MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA

Arabidopsis Description

RPS2B40S ribosomal protein S2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.