Factsheet for GSMUA_AchrUn_randomP09450_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P07500_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	GSMUA_Achr3P07500_001	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P12890_001	Banana	cytosol	93.09	92.24
GSMUA_Achr2P07800_001	Banana	cytosol	91.71	90.05
GSMUA_Achr8P31470_001	Banana	cytosol	52.07	73.38
GSMUA_Achr1P22950_001	Banana	cytosol, endoplasmic reticulum, nucleus	83.87	71.65
KRH41719	Soybean	nucleus	45.16	70.5
KRH60418	Soybean	mitochondrion, nucleus	87.56	69.85
PGSC0003DMT400079142	Potato	cytosol	82.95	69.5
KRH70352	Soybean	endoplasmic reticulum, nucleus	87.1	68.73
KRH27874	Soybean	nucleus	87.1	68.73
KRH27864	Soybean	nucleus	87.1	68.73
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	85.71	68.13
Solyc04g074300.2.1	Tomato	nucleus	83.87	65.0
PGSC0003DMT400063904	Potato	cytosol	83.87	65.0
Zm00001d034550_P001	Maize	plasma membrane, plastid	82.03	64.96
Zm00001d013034_P001	Maize	plastid	82.03	64.96
Os03t0807800-01	Rice	nucleus	82.03	64.96
Solyc04g063290.2.1	Tomato	nucleus	83.41	64.64
TraesCS5B01G468500.1	Wheat	plastid	81.11	64.23
EER93243	Sorghum	cytosol	80.65	63.87
EER93242	Sorghum	cytosol	80.65	63.87
TraesCS5A01G458900.1	Wheat	cytosol	80.18	63.27
TraesCS5D01G470000.1	Wheat	extracellular, golgi, plastid, unclear	80.65	62.72
Zm00001d019147_P001	Maize	plasma membrane, plastid	79.72	62.01
TraesCS3A01G366100.1	Wheat	golgi	79.26	61.87
Bra004654.1-P	Field mustard	cytosol	81.11	61.75
EER96052	Sorghum	cytosol	79.26	61.65
AT3G57490.1	Thale cress	cytosol	78.34	61.59
TraesCS3B01G376600.1	Wheat	nucleus	78.34	61.15
Bra016913.1-P	Field mustard	cytosol	80.18	61.05
TraesCS3D01G338200.1	Wheat	cytosol	77.88	60.79
HORVU3Hr1G086050.1	Barley	cytosol	77.88	60.79
PGSC0003DMT400013052	Potato	cytosol	29.95	60.19
Bra000242.1-P	Field mustard	cytosol	77.88	59.93
Bra035439.1-P	Field mustard	cytosol	76.96	59.64
AT2G41840.1	Thale cress	cytosol	77.42	58.95
AT1G58380.1	Thale cress	cytosol	76.96	58.8
AT1G59359.1	Thale cress	cytosol	76.5	58.45
AT1G58983.1	Thale cress	cytosol	76.5	58.45
AT1G58684.1	Thale cress	cytosol	76.5	58.45
Os07t0207400-01	Rice	cytosol, golgi, nucleus, plasma membrane	41.94	55.15
OQU76471	Sorghum	cytosol	52.07	51.6
HORVU5Hr1G109910.2	Barley	cytosol	70.05	50.16
Bra027857.1-P	Field mustard	cytosol, mitochondrion, nucleus	11.98	40.62

Protein Annotations

Gene3D:3.30.230.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSMUA_AchrUn_randomG09450_001	EnsemblPlants:GSMUA_AchrUn_randomP09450_001	EnsemblPlants:GSMUA_AchrUn_randomT09450_001	InterPro:IPR013810
InterPro:IPR014721	UniProt:M0U7Q5	PFAM:PF00333	PFAM:PF03719	PFscan:PS50881	PANTHER:PTHR13718
PANTHER:PTHR13718:SF79	InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N
SUPFAM:SSF54211	UniParc:UPI000296A3F1	SEG:seg	:	:	:

Description

40S ribosomal protein S2-4 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG09450_001]

Coordinates

chrchrUn_random:+:44736748..44739784

Molecular Weight (calculated)

24266.6 Da

IEP (calculated)

11.128

GRAVY (calculated)

-0.553

Length

217 amino acids

Sequence
(BLAST)

001: MAERGGDRGG FGRGFGRGRG DRGRGRGDRG RGRRGGRREE EEKWVPVTKL GRLVKEGKIT SLEQIYLHSL PVKEHQIIDT LLGGRLKDEV MKIMPVQKQT
101: RAGQRTRFKA FVTGKCGSVT VRMVPAPRGA GIVAARVPKK VLQFAGIEDV FTSSRGSTKT LGNFVKATFE CLMKTYGFLT PDFWMETRFS KSPFQEYTDL
201: LAKPTKAIIL ENTERVE

Best Arabidopsis Sequence Match ( AT3G57490.1 )
(BLAST)

001: MAERGVERGG DRGDFGRGFG GRGGGRGGPR GRGRRAGRAP EEEKWVPVTK LGRLVKEGKI TKIEQIYLHS LPVKEYQIID LLVGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE

Arabidopsis Description

RPS2D40S ribosomal protein S2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCM3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.