Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH60418 | Soybean | mitochondrion, nucleus | 84.42 | 85.66 |
| CDY06903 | Canola | cytosol | 77.9 | 83.98 |
| KRH70352 | Soybean | endoplasmic reticulum, nucleus | 83.33 | 83.64 |
| KRH27874 | Soybean | nucleus | 83.33 | 83.64 |
| KRH27864 | Soybean | nucleus | 83.33 | 83.64 |
| AT1G58684.1 | Thale cress | cytosol | 85.87 | 83.45 |
| AT1G58380.1 | Thale cress | cytosol | 85.87 | 83.45 |
| AT1G58983.1 | Thale cress | cytosol | 85.87 | 83.45 |
| AT1G59359.1 | Thale cress | cytosol | 85.87 | 83.45 |
| Os07t0207400-01 | Rice | cytosol, golgi, nucleus, plasma membrane | 49.64 | 83.03 |
| Bra000242.1-P | Field mustard | cytosol | 83.7 | 81.91 |
| AT2G41840.1 | Thale cress | cytosol | 84.42 | 81.75 |
| CDY22542 | Canola | cytosol | 83.33 | 81.56 |
| CDX79908 | Canola | cytosol | 84.06 | 81.4 |
| KRH41719 | Soybean | nucleus | 40.94 | 81.3 |
| Bra004654.1-P | Field mustard | cytosol | 83.7 | 81.05 |
| Solyc04g074300.2.1 | Tomato | nucleus | 81.88 | 80.71 |
| PGSC0003DMT400063904 | Potato | cytosol | 81.88 | 80.71 |
| VIT_08s0007g08370.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 79.71 | 80.59 |
| Solyc04g063290.2.1 | Tomato | nucleus | 81.52 | 80.36 |
| Bra016913.1-P | Field mustard | cytosol | 82.97 | 80.35 |
| CDY14790 | Canola | cytosol | 82.97 | 80.35 |
| TraesCS5B01G468500.1 | Wheat | plastid | 79.35 | 79.93 |
| GSMUA_Achr1P22950_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 73.55 | 79.92 |
| Zm00001d034550_P001 | Maize | plasma membrane, plastid | 78.99 | 79.56 |
| Zm00001d013034_P001 | Maize | plastid | 78.99 | 79.56 |
| EER93242 | Sorghum | cytosol | 78.99 | 79.56 |
| EER93243 | Sorghum | cytosol | 78.99 | 79.56 |
| Os03t0807800-01 | Rice | nucleus | 78.99 | 79.56 |
| TraesCS5A01G458900.1 | Wheat | cytosol | 78.99 | 79.27 |
| PGSC0003DMT400079142 | Potato | cytosol | 74.28 | 79.15 |
| GSMUA_Achr1P12890_001 | Banana | cytosol | 62.68 | 79.0 |
| TraesCS5D01G470000.1 | Wheat | extracellular, golgi, plastid, unclear | 79.35 | 78.49 |
| TraesCS3A01G366100.1 | Wheat | golgi | 78.99 | 78.42 |
| GSMUA_AchrUn_... | Banana | cytosol | 61.59 | 78.34 |
| GSMUA_Achr2P07800_001 | Banana | cytosol | 62.68 | 78.28 |
| HORVU3Hr1G086050.1 | Barley | cytosol | 78.26 | 77.7 |
| TraesCS3B01G376600.1 | Wheat | nucleus | 78.26 | 77.7 |
| TraesCS3D01G338200.1 | Wheat | cytosol | 78.26 | 77.7 |
| EER96052 | Sorghum | cytosol | 77.9 | 77.06 |
| Zm00001d019147_P001 | Maize | plasma membrane, plastid | 77.9 | 77.06 |
| CDY35397 | Canola | cytosol, extracellular | 83.7 | 76.24 |
| HORVU5Hr1G109910.2 | Barley | cytosol | 71.74 | 65.35 |
| GSMUA_Achr8P31470_001 | Banana | cytosol | 34.42 | 61.69 |
| OQU76471 | Sorghum | cytosol | 45.29 | 57.08 |
| PGSC0003DMT400013052 | Potato | cytosol | 21.38 | 54.63 |
| OQU90562 | Sorghum | cytosol, plastid | 28.62 | 40.93 |
Protein Annotations
| MapMan:17.1.3.1.2 | Gene3D:3.30.160.770 | Gene3D:3.30.230.10 | EntrezGene:824916 | ProteinID:AEE79662.1 | EMBL:AK228054 |
| ArrayExpress:AT3G57490 | EnsemblPlantsGene:AT3G57490 | RefSeq:AT3G57490 | TAIR:AT3G57490 | RefSeq:AT3G57490-TAIR-G | EnsemblPlants:AT3G57490.1 |
| TAIR:AT3G57490.1 | EMBL:AY084252 | EMBL:BT006200 | ProteinID:CAB66106.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0015935 |
| GO:GO:0016020 | GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030529 | GO:GO:0046872 | InterPro:IPR013810 |
| InterPro:IPR014721 | RefSeq:NP_191308.1 | PFAM:PF00333 | PFAM:PF03719 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | ScanProsite:PS00585 |
| PFscan:PS50881 | PANTHER:PTHR13718 | PANTHER:PTHR13718:SF79 | UniProt:Q9SCM3 | InterPro:Ribosomal_S5 | InterPro:Ribosomal_S5_C |
| InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Ribosomal_S5_D2-typ_fold_subgr | InterPro:Ribosomal_S5_N | InterPro:Ribosomal_S5_N_CS | InterPro:Ribosomal_S5_euk/arc | SUPFAM:SSF54211 |
| SUPFAM:SSF54768 | TIGRFAMs:TIGR01020 | UniParc:UPI000005EA72 | SEG:seg | : | : |
Description
RPS2D40S ribosomal protein S2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCM3]
Coordinates
chr3:-:21279596..21281064
Molecular Weight (calculated)
30117.9 Da
IEP (calculated)
10.880
GRAVY (calculated)
-0.292
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERGVERGG DRGDFGRGFG GRGGGRGGPR GRGRRAGRAP EEEKWVPVTK LGRLVKEGKI TKIEQIYLHS LPVKEYQIID LLVGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.