CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016913.1-P	Field mustard	cytosol	100.0	100.0
CDY06903	Canola	cytosol	89.47	99.61
CDY22542	Canola	cytosol	95.44	96.45
CDX79908	Canola	cytosol	96.14	96.14
CDY42063	Canola	mitochondrion	30.88	90.72
CDY45881	Canola	cytosol	87.02	89.86
CDY35397	Canola	cytosol, extracellular	94.04	88.45
CDY44553	Canola	cytosol	85.96	87.5
KRH60418	Soybean	mitochondrion, nucleus	80.7	84.56
KRH70352	Soybean	endoplasmic reticulum, nucleus	80.35	83.27
KRH27864	Soybean	nucleus	80.35	83.27
KRH27874	Soybean	nucleus	80.35	83.27
AT3G57490.1	Thale cress	cytosol	80.35	82.97
KRH41719	Soybean	nucleus	40.35	82.73
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	78.95	82.42
PGSC0003DMT400063904	Potato	cytosol	80.0	81.43
Solyc04g063290.2.1	Tomato	nucleus	79.65	81.07
Solyc04g074300.2.1	Tomato	nucleus	79.65	81.07
PGSC0003DMT400079142	Potato	cytosol	72.28	79.54
CDY65554	Canola	cytosol	14.04	74.07
PGSC0003DMT400013052	Potato	cytosol	20.7	54.63
CDX82895	Canola	extracellular	28.77	50.62
CDY42822	Canola	mitochondrion	16.84	50.53
CDX99877	Canola	mitochondrion, plastid	16.49	46.08

Protein Annotations

MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	GO:A0A078FK35	UniProt:A0A078FK35	EnsemblPlants:CDY14790
ProteinID:CDY14790	ProteinID:CDY14790.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00084657001	InterPro:IPR013810	InterPro:IPR014721
PFAM:PF00333	PFAM:PF03719	ScanProsite:PS00585	PFscan:PS50881	PANTHER:PTHR13718	PANTHER:PTHR13718:SF79
InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_N_CS
InterPro:Ribosomal_S5_euk/arc	SUPFAM:SSF54211	SUPFAM:SSF54768	TIGRFAMs:TIGR01020	UniParc:UPI0002543704	SEG:seg

Description

BnaC04g47870DBnaC04g47870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FK35]

Coordinates

chrLK032047:-:392337..394354

Molecular Weight (calculated)

30763.4 Da

IEP (calculated)

10.831

GRAVY (calculated)

-0.429

Length

285 amino acids

Sequence
(BLAST)

001: MAERGGERGA ERGGDRGGFG RGFGGGRGDR GGRGGPRGRG GRRGGRPTEE EKWTPVTKLG RLVQAGKIQK LEQIYLHSLP VKEYQIIDLL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDTNGHV GLGVKCSKEV ATAIRGGIIL AKLSVIPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGAGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETSFKKSPYQ EYTDLLAEKG TATKAITEVE DQAAS

Best Arabidopsis Sequence Match ( AT1G58380.1 )
(BLAST)

001: MAERGGEGGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA

Arabidopsis Description

RPS2AAt1g59359 [Source:UniProtKB/TrEMBL;Acc:G1JSI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.