CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	extracellular, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42822	Canola	mitochondrion	30.25	51.58
CDX99877	Canola	mitochondrion, plastid	30.86	49.02
CDY42063	Canola	mitochondrion	26.54	44.33
CDY06903	Canola	cytosol	50.62	32.03
CDY45881	Canola	cytosol	50.62	29.71
CDY44553	Canola	cytosol	50.62	29.29
CDY22542	Canola	cytosol	50.62	29.08
CDX79908	Canola	cytosol	50.62	28.77
CDY14790	Canola	cytosol	50.62	28.77
CDY35397	Canola	cytosol, extracellular	50.62	27.06
OQU90562	Sorghum	cytosol, plastid	26.54	22.28
CDY65554	Canola	cytosol	3.09	9.26

Protein Annotations

Gene3D:3.30.230.10	MapMan:35.1	GO:A0A078D190	EnsemblPlants:CDX82895	ProteinID:CDX82895	ProteinID:CDX82895.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00138271001	InterPro:IPR014721	PFAM:PF03719	PANTHER:PTHR13718
PANTHER:PTHR13718:SF79	InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SUPFAM:SSF54211
UniParc:UPI0004EEB84B	:	:	:	:	:

Description

BnaC01g13450D

Coordinates

chrLK031830:-:1148232..1149541

Molecular Weight (calculated)

17588.9 Da

IEP (calculated)

10.747

GRAVY (calculated)

0.301

Length

162 amino acids

Sequence
(BLAST)

001: MGKCWVSSRD INVSLILLRP SLMQFLGIIS SVQSAYLCFS LLSSSPVKRG YWGNKIGKPH TVPCKVTGKC GSVTVRMVPA PRGAGIVAAR VPKMVLQFNG
101: IDDVFISSRG STKTLGNLVK LKQNGLVGNF CAWSKLYQFA MVGWASILSV ARVSCDQNLY IK

Best Arabidopsis Sequence Match ( AT1G58684.1 )
(BLAST)

001: MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA

Arabidopsis Description

RPS2B40S ribosomal protein S2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.