CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY22038
CDY52785

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	CDY22038	AT4G02220.1	21798944
AT2G41840.1	CDY52785	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44553	Canola	cytosol	95.29	93.93
CDY06903	Canola	cytosol	84.42	91.02
CDY42063	Canola	mitochondrion	31.16	88.66
CDY22542	Canola	cytosol	89.49	87.59
CDY14790	Canola	cytosol	89.86	87.02
AT1G58684.1	Thale cress	cytosol	88.41	85.92
AT1G58380.1	Thale cress	cytosol	88.41	85.92
AT1G59359.1	Thale cress	cytosol	88.41	85.92
AT1G58983.1	Thale cress	cytosol	88.41	85.92
KRH60418	Soybean	mitochondrion, nucleus	84.42	85.66
CDX79908	Canola	cytosol	86.96	84.21
KRH70352	Soybean	endoplasmic reticulum, nucleus	83.33	83.64
KRH27864	Soybean	nucleus	83.33	83.64
KRH27874	Soybean	nucleus	83.33	83.64
KRH41719	Soybean	nucleus	41.67	82.73
Solyc04g063290.2.1	Tomato	nucleus	83.7	82.5
PGSC0003DMT400063904	Potato	cytosol	83.33	82.14
Solyc04g074300.2.1	Tomato	nucleus	82.97	81.79
PGSC0003DMT400079142	Potato	cytosol	76.45	81.47
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	80.43	81.32
AT2G41840.1	Thale cress	cytosol	83.33	80.7
CDY35397	Canola	cytosol, extracellular	88.41	80.53
CDY65554	Canola	cytosol	14.49	74.07
PGSC0003DMT400013052	Potato	cytosol	22.1	56.48
CDY42822	Canola	mitochondrion	17.75	51.58
CDX82895	Canola	extracellular	29.71	50.62
CDX99877	Canola	mitochondrion, plastid	17.39	47.06

Protein Annotations

MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	GO:A0A078I7M4	UniProt:A0A078I7M4	EnsemblPlants:CDY45881
ProteinID:CDY45881	ProteinID:CDY45881.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00082857001	InterPro:IPR013810	InterPro:IPR014721
PFAM:PF00333	PFAM:PF03719	ScanProsite:PS00585	PFscan:PS50881	PANTHER:PTHR13718	PANTHER:PTHR13718:SF79
InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_N_CS
InterPro:Ribosomal_S5_euk/arc	SUPFAM:SSF54211	SUPFAM:SSF54768	TIGRFAMs:TIGR01020	UniParc:UPI0004EDDB38	SEG:seg

Description

BnaC01g28170DBnaC01g28170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7M4]

Coordinates

chrLK032640:-:51266..52784

Molecular Weight (calculated)

30054.6 Da

IEP (calculated)

10.832

GRAVY (calculated)

-0.406

Length

276 amino acids

Sequence
(BLAST)

001: MAERGGERGG ERGGFGRGFG GRGGGRGGPR GRGRRAGRPT EEEKWTPVTK LGRLVRDGKI KQLEQIYLHS LPVKEYQIID LLVGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFVVVGDNNG HVGLGVKCSK EVATAIRGGI ILAKLSVIPV RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGAGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETSFKKSP YQEYTDFLTT KADSAAKVIT EVEDQA

Best Arabidopsis Sequence Match ( AT1G58380.1 )
(BLAST)

001: MAERGGEGGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA

Arabidopsis Description

RPS2AAt1g59359 [Source:UniProtKB/TrEMBL;Acc:G1JSI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.