CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42063	Canola	mitochondrion	34.38	90.72
Bra016913.1-P	Field mustard	cytosol	99.61	89.47
CDY14790	Canola	cytosol	99.61	89.47
CDY22542	Canola	cytosol	97.66	88.65
CDX79908	Canola	cytosol	95.31	85.61
CDY45881	Canola	cytosol	91.02	84.42
KRH41719	Soybean	nucleus	44.92	82.73
CDY44553	Canola	cytosol	89.84	82.14
CDY35397	Canola	cytosol, extracellular	96.09	81.19
KRH60418	Soybean	mitochondrion, nucleus	85.94	80.88
KRH70352	Soybean	endoplasmic reticulum, nucleus	85.16	79.27
KRH27864	Soybean	nucleus	85.16	79.27
KRH27874	Soybean	nucleus	85.16	79.27
AT3G57490.1	Thale cress	cytosol	83.98	77.9
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	82.42	77.29
PGSC0003DMT400063904	Potato	cytosol	83.98	76.79
Solyc04g063290.2.1	Tomato	nucleus	83.98	76.79
Solyc04g074300.2.1	Tomato	nucleus	83.98	76.79
PGSC0003DMT400079142	Potato	cytosol	75.78	74.9
CDY65554	Canola	cytosol	15.62	74.07
PGSC0003DMT400013052	Potato	cytosol	23.05	54.63
CDX82895	Canola	extracellular	32.03	50.62
CDY42822	Canola	mitochondrion	18.75	50.53
CDX99877	Canola	mitochondrion, plastid	18.36	46.08

Protein Annotations

MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	GO:A0A078F5D8	EnsemblPlants:CDY06903	ProteinID:CDY06903
ProteinID:CDY06903.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935
GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00123191001	InterPro:IPR013810	InterPro:IPR014721	PFAM:PF00333
PFAM:PF03719	ScanProsite:PS00585	PFscan:PS50881	PANTHER:PTHR13718	PANTHER:PTHR13718:SF79	InterPro:Ribosomal_S5
InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_N_CS	InterPro:Ribosomal_S5_euk/arc
SUPFAM:SSF54211	SUPFAM:SSF54768	TIGRFAMs:TIGR01020	UniParc:UPI0004EEF320	SEG:seg	:

Description

BnaA04g24120D

Coordinates

chrLK031974:+:107313..109118

Molecular Weight (calculated)

27992.2 Da

IEP (calculated)

10.612

GRAVY (calculated)

-0.312

Length

256 amino acids

Sequence
(BLAST)

001: MAERGGERGR GGRRGGRPTE EEKWTPVTKL GRLVQAGKIQ KLEQIYLHSL PVKEYQIIDL LVGPTLKDEV MKIMPVQKQT RAGQRTRFKA FVVVGDTNGH
101: VGLGVKCSKE VATAIRGGII LAKLSVIPVR RGYWGNKIGK PHTVPCKVTG KCGSVTVRMV PAPRGAGIVA ARVPKKVLQF AGIDDVFTSS RGSTKTLGNF
201: VKATFDCLQK TYGFLTPEFW KETSFKKSPY QEYTDLLAEK GTATKAITEV EDQAAS

Best Arabidopsis Sequence Match ( AT1G58983.1 )
(BLAST)

001: MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA

Arabidopsis Description

RPS2B40S ribosomal protein S2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.