Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
unclear: 26455813 |
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc08g076440.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G41840.1 | Solyc08g076440.2.1 | AT4G02220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400063904 | Potato | cytosol | 99.64 | 99.64 |
| Solyc04g074300.2.1 | Tomato | nucleus | 99.29 | 99.29 |
| KRH60418 | Soybean | mitochondrion, nucleus | 85.36 | 87.87 |
| KRH27864 | Soybean | nucleus | 85.71 | 87.27 |
| KRH70352 | Soybean | endoplasmic reticulum, nucleus | 85.71 | 87.27 |
| KRH27874 | Soybean | nucleus | 85.71 | 87.27 |
| VIT_08s0007g08370.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 84.64 | 86.81 |
| Os07t0207400-01 | Rice | cytosol, golgi, nucleus, plasma membrane | 50.71 | 86.06 |
| GSMUA_Achr1P22950_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 76.79 | 84.65 |
| CDY06903 | Canola | cytosol | 76.79 | 83.98 |
| CDY45881 | Canola | cytosol | 82.5 | 83.7 |
| GSMUA_AchrUn_... | Banana | cytosol | 64.64 | 83.41 |
| GSMUA_Achr1P12890_001 | Banana | cytosol | 65.0 | 83.11 |
| GSMUA_Achr2P07800_001 | Banana | cytosol | 65.36 | 82.81 |
| KRH41719 | Soybean | nucleus | 41.07 | 82.73 |
| Os03t0807800-01 | Rice | nucleus | 80.0 | 81.75 |
| AT3G57490.1 | Thale cress | cytosol | 80.36 | 81.52 |
| Bra000242.1-P | Field mustard | cytosol | 81.79 | 81.21 |
| Zm00001d013034_P001 | Maize | plastid | 79.29 | 81.02 |
| CDY22542 | Canola | cytosol | 81.43 | 80.85 |
| Bra035439.1-P | Field mustard | cytosol | 80.71 | 80.71 |
| CDY44553 | Canola | cytosol | 80.71 | 80.71 |
| Zm00001d034550_P001 | Maize | plasma membrane, plastid | 78.93 | 80.66 |
| EER93243 | Sorghum | cytosol | 78.93 | 80.66 |
| EER93242 | Sorghum | cytosol | 78.93 | 80.66 |
| TraesCS5A01G458900.1 | Wheat | cytosol | 78.93 | 80.36 |
| AT2G41840.1 | Thale cress | cytosol | 81.79 | 80.35 |
| CDX79908 | Canola | cytosol | 81.79 | 80.35 |
| TraesCS5B01G468500.1 | Wheat | plastid | 78.57 | 80.29 |
| Bra004654.1-P | Field mustard | cytosol | 81.43 | 80.0 |
| Bra016913.1-P | Field mustard | cytosol | 81.07 | 79.65 |
| CDY14790 | Canola | cytosol | 81.07 | 79.65 |
| AT1G58380.1 | Thale cress | cytosol | 80.0 | 78.87 |
| TraesCS5D01G470000.1 | Wheat | extracellular, golgi, plastid, unclear | 78.57 | 78.85 |
| TraesCS3A01G366100.1 | Wheat | golgi | 78.21 | 78.78 |
| TraesCS3B01G376600.1 | Wheat | nucleus | 78.21 | 78.78 |
| AT1G59359.1 | Thale cress | cytosol | 79.64 | 78.52 |
| AT1G58983.1 | Thale cress | cytosol | 79.64 | 78.52 |
| AT1G58684.1 | Thale cress | cytosol | 79.64 | 78.52 |
| Zm00001d019147_P001 | Maize | plasma membrane, plastid | 78.21 | 78.49 |
| HORVU3Hr1G086050.1 | Barley | cytosol | 77.86 | 78.42 |
| TraesCS3D01G338200.1 | Wheat | cytosol | 77.86 | 78.42 |
| EER96052 | Sorghum | cytosol | 77.86 | 78.14 |
| CDY35397 | Canola | cytosol, extracellular | 81.79 | 75.58 |
| CDY42063 | Canola | mitochondrion | 25.36 | 73.2 |
| GSMUA_Achr8P31470_001 | Banana | cytosol | 35.71 | 64.94 |
| HORVU5Hr1G109910.2 | Barley | cytosol | 69.64 | 64.36 |
| OQU76471 | Sorghum | cytosol | 43.93 | 56.16 |
| CDY65554 | Canola | cytosol | 8.93 | 46.3 |
| OQU90562 | Sorghum | cytosol, plastid | 28.21 | 40.93 |
| Bra027857.1-P | Field mustard | cytosol, mitochondrion, nucleus | 8.21 | 35.94 |
Protein Annotations
| MapMan:17.1.3.1.2 | Gene3D:3.30.160.770 | Gene3D:3.30.230.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015935 | GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030529 |
| InterPro:IPR013810 | InterPro:IPR014721 | UniProt:K4BT19 | PFAM:PF00333 | PFAM:PF03719 | ScanProsite:PS00585 |
| PFscan:PS50881 | PANTHER:PTHR13718 | PANTHER:PTHR13718:SF79 | InterPro:Ribosomal_S5 | InterPro:Ribosomal_S5_C | InterPro:Ribosomal_S5_D2-typ_fold |
| InterPro:Ribosomal_S5_D2-typ_fold_subgr | InterPro:Ribosomal_S5_N | InterPro:Ribosomal_S5_N_CS | InterPro:Ribosomal_S5_euk/arc | SUPFAM:SSF54211 | SUPFAM:SSF54768 |
| EnsemblPlantsGene:Solyc04g063290.2 | EnsemblPlants:Solyc04g063290.2.1 | TIGRFAMs:TIGR01020 | UniParc:UPI0002766230 | SEG:seg | : |
Description
No Description!
Coordinates
chr4:-:55422546..55424589
Molecular Weight (calculated)
30578.4 Da
IEP (calculated)
10.967
GRAVY (calculated)
-0.336
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERGGGERG GFGRGFGGRG GRGGDRGGRG RGGRRPRRET EEEKWVPVTK LGRLVKDGKI RSLEQIYLHS LPIKEFQIID TLIGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFVVVGDGNG HVGLGVKCSK EVATAIRGGI ILAKLSVIPV RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGAGIV AARVPKKVLQ
201: FAGIEDVFTS SRGSTKTLGN FVKATFDCLM KTYGFLTPDF WKETRFTKSP FQEYFDILAK PANKVIVYAT EEAAPERVEA
101: TRAGQRTRFK AFVVVGDGNG HVGLGVKCSK EVATAIRGGI ILAKLSVIPV RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGAGIV AARVPKKVLQ
201: FAGIEDVFTS SRGSTKTLGN FVKATFDCLM KTYGFLTPDF WKETRFTKSP FQEYFDILAK PANKVIVYAT EEAAPERVEA
001: MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA
Arabidopsis Description
RPS2B40S ribosomal protein S2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VB8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.