Factsheet for Zm00001d034550_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 22065420
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d035481_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	Zm00001d035481_P001	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013034_P001	Maize	plastid	98.54	98.54
EER93242	Sorghum	cytosol	97.08	97.08
EER93243	Sorghum	cytosol	96.72	96.72
Zm00001d019147_P001	Maize	plasma membrane, plastid	94.53	92.83
Os07t0207400-01	Rice	cytosol, golgi, nucleus, plasma membrane	54.74	90.91
GSMUA_Achr1P22950_001	Banana	cytosol, endoplasmic reticulum, nucleus	78.1	84.25
KRH60418	Soybean	mitochondrion, nucleus	83.21	83.82
KRH70352	Soybean	endoplasmic reticulum, nucleus	83.94	83.64
KRH27874	Soybean	nucleus	83.94	83.64
KRH27864	Soybean	nucleus	83.94	83.64
KRH41719	Soybean	nucleus	42.34	83.45
GSMUA_AchrUn_...	Banana	cytosol	64.96	82.03
GSMUA_Achr1P12890_001	Banana	cytosol	65.33	81.74
GSMUA_Achr2P07800_001	Banana	cytosol	65.69	81.45
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	81.02	81.32
AT3G57490.1	Thale cress	cytosol	79.56	78.99
Solyc04g063290.2.1	Tomato	nucleus	80.66	78.93
AT2G41840.1	Thale cress	cytosol	81.75	78.6
PGSC0003DMT400063904	Potato	cytosol	80.29	78.57
Solyc04g074300.2.1	Tomato	nucleus	79.93	78.21
Bra004654.1-P	Field mustard	cytosol	81.02	77.89
PGSC0003DMT400079142	Potato	cytosol	73.36	77.61
Bra016913.1-P	Field mustard	cytosol	80.66	77.54
AT1G58684.1	Thale cress	cytosol	80.29	77.46
AT1G59359.1	Thale cress	cytosol	80.29	77.46
AT1G58983.1	Thale cress	cytosol	80.29	77.46
Bra000242.1-P	Field mustard	cytosol	79.56	77.31
AT1G58380.1	Thale cress	cytosol	79.2	76.41
Bra035439.1-P	Field mustard	cytosol	77.37	75.71
GSMUA_Achr8P31470_001	Banana	cytosol	36.5	64.94
PGSC0003DMT400013052	Potato	cytosol	22.63	57.41
Bra027857.1-P	Field mustard	cytosol, mitochondrion, nucleus	7.66	32.81

Protein Annotations

EntrezGene:100383062	MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	EMBL:BT066075	UniProt:C0PCQ6
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538
GO:GO:0030529	InterPro:IPR013810	InterPro:IPR014721	ProteinID:ONM10552.1	PFAM:PF00333	PFAM:PF03719
ScanProsite:PS00585	PFscan:PS50881	PANTHER:PTHR13718	PANTHER:PTHR13718:SF74	InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_N_CS	InterPro:Ribosomal_S5_euk/arc	SUPFAM:SSF54211
SUPFAM:SSF54768	TIGRFAMs:TIGR01020	UniParc:UPI000194B377	EnsemblPlantsGene:Zm00001d034550	EnsemblPlants:Zm00001d034550_P001	EnsemblPlants:Zm00001d034550_T001
SEG:seg	:	:	:	:	:

Description

40S ribosomal protein S2-1

Coordinates

chr1:+:296028286..296030453

Molecular Weight (calculated)

29937.6 Da

IEP (calculated)

10.847

GRAVY (calculated)

-0.336

Length

274 amino acids

Sequence
(BLAST)

001: MAERGGERGG ERGGFGRGFG RGGRGDRGGR RGGRRGPRQE EEKWVPVTKL GRLVKENRIT KIEEIYLHSL PVKEHQIIET LVPGLKDEVM KITPVQKQTR
101: AGQRTRFKAF VVVGDCDGHV GLGVKCAKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGQP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA RVPKKVLQFA
201: GIEDVFTSSR GSTKTLGNFV KATFDCLMKT YGFLTPEFWS QTKFSMTPFQ QYTDLLAKPT KGLVLEAPTE TVEA

Best Arabidopsis Sequence Match ( AT3G57490.1 )
(BLAST)

001: MAERGVERGG DRGDFGRGFG GRGGGRGGPR GRGRRAGRAP EEEKWVPVTK LGRLVKEGKI TKIEQIYLHS LPVKEYQIID LLVGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE

Arabidopsis Description

RPS2D40S ribosomal protein S2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCM3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.