Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P07500_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G41840.1 | GSMUA_Achr3P07500_001 | AT4G02220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 92.24 | 93.09 |
| GSMUA_Achr2P07800_001 | Banana | cytosol | 92.69 | 91.86 |
| GSMUA_Achr8P31470_001 | Banana | cytosol | 50.68 | 72.08 |
| GSMUA_Achr1P22950_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 83.56 | 72.05 |
| PGSC0003DMT400079142 | Potato | cytosol | 82.65 | 69.88 |
| KRH60418 | Soybean | mitochondrion, nucleus | 86.76 | 69.85 |
| KRH41719 | Soybean | nucleus | 43.84 | 69.06 |
| KRH70352 | Soybean | endoplasmic reticulum, nucleus | 85.84 | 68.36 |
| KRH27874 | Soybean | nucleus | 85.84 | 68.36 |
| KRH27864 | Soybean | nucleus | 85.84 | 68.36 |
| VIT_08s0007g08370.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 82.65 | 66.3 |
| Solyc04g074300.2.1 | Tomato | nucleus | 83.56 | 65.36 |
| PGSC0003DMT400063904 | Potato | cytosol | 83.56 | 65.36 |
| Zm00001d034550_P001 | Maize | plasma membrane, plastid | 81.74 | 65.33 |
| Zm00001d013034_P001 | Maize | plastid | 81.74 | 65.33 |
| Solyc04g063290.2.1 | Tomato | nucleus | 83.11 | 65.0 |
| Os03t0807800-01 | Rice | nucleus | 81.28 | 64.96 |
| EER93243 | Sorghum | cytosol | 80.37 | 64.23 |
| EER93242 | Sorghum | cytosol | 80.37 | 64.23 |
| TraesCS5B01G468500.1 | Wheat | plastid | 79.91 | 63.87 |
| TraesCS5A01G458900.1 | Wheat | cytosol | 79.0 | 62.91 |
| Zm00001d019147_P001 | Maize | plasma membrane, plastid | 79.91 | 62.72 |
| AT3G57490.1 | Thale cress | cytosol | 79.0 | 62.68 |
| TraesCS5D01G470000.1 | Wheat | extracellular, golgi, plastid, unclear | 79.45 | 62.37 |
| EER96052 | Sorghum | cytosol | 79.45 | 62.37 |
| TraesCS3A01G366100.1 | Wheat | golgi | 78.54 | 61.87 |
| Bra004654.1-P | Field mustard | cytosol | 79.91 | 61.4 |
| TraesCS3B01G376600.1 | Wheat | nucleus | 77.63 | 61.15 |
| PGSC0003DMT400013052 | Potato | cytosol | 30.14 | 61.11 |
| Bra016913.1-P | Field mustard | cytosol | 79.45 | 61.05 |
| TraesCS3D01G338200.1 | Wheat | cytosol | 77.17 | 60.79 |
| HORVU3Hr1G086050.1 | Barley | cytosol | 76.71 | 60.43 |
| Bra000242.1-P | Field mustard | cytosol | 77.63 | 60.28 |
| AT1G58380.1 | Thale cress | cytosol | 76.71 | 59.15 |
| AT2G41840.1 | Thale cress | cytosol | 76.71 | 58.95 |
| Bra035439.1-P | Field mustard | cytosol | 74.89 | 58.57 |
| AT1G59359.1 | Thale cress | cytosol | 75.8 | 58.45 |
| AT1G58983.1 | Thale cress | cytosol | 75.8 | 58.45 |
| AT1G58684.1 | Thale cress | cytosol | 75.8 | 58.45 |
| Os07t0207400-01 | Rice | cytosol, golgi, nucleus, plasma membrane | 42.01 | 55.76 |
| OQU76471 | Sorghum | cytosol | 51.6 | 51.6 |
| HORVU5Hr1G109910.2 | Barley | cytosol | 69.41 | 50.16 |
| Bra027857.1-P | Field mustard | cytosol, mitochondrion, nucleus | 10.96 | 37.5 |
Protein Annotations
| Gene3D:3.30.230.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0030529 | EnsemblPlantsGene:GSMUA_Achr1G12890_001 | EnsemblPlants:GSMUA_Achr1P12890_001 | EnsemblPlants:GSMUA_Achr1T12890_001 | InterPro:IPR013810 |
| InterPro:IPR014721 | UniProt:M0RZE7 | PFAM:PF00333 | PFAM:PF03719 | PFscan:PS50881 | PANTHER:PTHR13718 |
| PANTHER:PTHR13718:SF79 | InterPro:Ribosomal_S5 | InterPro:Ribosomal_S5_C | InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Ribosomal_S5_D2-typ_fold_subgr | InterPro:Ribosomal_S5_N |
| SUPFAM:SSF54211 | UniParc:UPI000296A990 | SEG:seg | : | : | : |
Description
40S ribosomal protein S2-4 [Source:GMGC_GENE;Acc:GSMUA_Achr1G12890_001]
Coordinates
chr1:-:9904125..9907366
Molecular Weight (calculated)
24272.6 Da
IEP (calculated)
11.050
GRAVY (calculated)
-0.469
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERGGGDRG GFGRGFGRGF GRGRGRGDRG RGRRGGGRRD EEEKWVPVTK LGRLVKEGKI TSLEQIYLHS LPVKEHQIID TLLGGRLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFVTGKCGSV TVRMVPAPRG AGIVAARVPK KVLQFAGIED VFTSSRGSTK TLGNFVKATF DCLMKTYGFL TPDFWMETRF SKSPFQEYTD
201: LLAKPTKTIL LENTEVVEA
101: TRAGQRTRFK AFVTGKCGSV TVRMVPAPRG AGIVAARVPK KVLQFAGIED VFTSSRGSTK TLGNFVKATF DCLMKTYGFL TPDFWMETRF SKSPFQEYTD
201: LLAKPTKTIL LENTEVVEA
001: MAERGVERGG DRGDFGRGFG GRGGGRGGPR GRGRRAGRAP EEEKWVPVTK LGRLVKEGKI TKIEQIYLHS LPVKEYQIID LLVGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE
Arabidopsis Description
RPS2D40S ribosomal protein S2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCM3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.