Factsheet for GSMUA_Achr1P22950_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P07500_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	GSMUA_Achr3P07500_001	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0207400-01	Rice	cytosol, golgi, nucleus, plasma membrane	57.48	88.48
KRH41719	Soybean	nucleus	46.46	84.89
GSMUA_AchrUn_...	Banana	cytosol	71.65	83.87
GSMUA_Achr1P12890_001	Banana	cytosol	72.05	83.56
GSMUA_Achr2P07800_001	Banana	cytosol	72.05	82.81
KRH60418	Soybean	mitochondrion, nucleus	87.01	81.25
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	85.83	79.85
KRH70352	Soybean	endoplasmic reticulum, nucleus	86.22	79.64
KRH27874	Soybean	nucleus	86.22	79.64
KRH27864	Soybean	nucleus	86.22	79.64
Os03t0807800-01	Rice	nucleus	85.04	78.83
Zm00001d034550_P001	Maize	plasma membrane, plastid	84.25	78.1
Zm00001d013034_P001	Maize	plastid	83.86	77.74
EER93242	Sorghum	cytosol	83.46	77.37
EER93243	Sorghum	cytosol	83.46	77.37
Solyc04g074300.2.1	Tomato	nucleus	85.04	77.14
PGSC0003DMT400063904	Potato	cytosol	85.04	77.14
Solyc04g063290.2.1	Tomato	nucleus	84.65	76.79
TraesCS5B01G468500.1	Wheat	plastid	82.68	76.64
TraesCS5A01G458900.1	Wheat	cytosol	82.68	76.36
Zm00001d019147_P001	Maize	plasma membrane, plastid	83.86	76.34
EER96052	Sorghum	cytosol	83.46	75.99
TraesCS5D01G470000.1	Wheat	extracellular, golgi, plastid, unclear	83.07	75.63
PGSC0003DMT400079142	Potato	cytosol	76.38	74.9
TraesCS3B01G376600.1	Wheat	nucleus	81.5	74.46
TraesCS3A01G366100.1	Wheat	golgi	81.5	74.46
TraesCS3D01G338200.1	Wheat	cytosol	81.1	74.1
HORVU3Hr1G086050.1	Barley	cytosol	81.1	74.1
Bra016913.1-P	Field mustard	cytosol	83.07	74.04
GSMUA_Achr8P31470_001	Banana	cytosol	44.88	74.03
Bra004654.1-P	Field mustard	cytosol	82.68	73.68
AT3G57490.1	Thale cress	cytosol	79.92	73.55
Bra000242.1-P	Field mustard	cytosol	81.5	73.4
AT2G41840.1	Thale cress	cytosol	81.5	72.63
AT1G58380.1	Thale cress	cytosol	80.71	72.18
Bra035439.1-P	Field mustard	cytosol	79.13	71.79
AT1G58983.1	Thale cress	cytosol	79.53	71.13
AT1G59359.1	Thale cress	cytosol	79.53	71.13
AT1G58684.1	Thale cress	cytosol	79.53	71.13
HORVU5Hr1G109910.2	Barley	cytosol	73.23	61.39
PGSC0003DMT400013052	Potato	cytosol	25.59	60.19
OQU76471	Sorghum	cytosol	49.21	57.08
Bra027857.1-P	Field mustard	cytosol, mitochondrion, nucleus	10.24	40.62

Protein Annotations

MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSMUA_Achr1G22950_001	EnsemblPlants:GSMUA_Achr1P22950_001
EnsemblPlants:GSMUA_Achr1T22950_001	InterPro:IPR013810	InterPro:IPR014721	UniProt:M0S2A3	PFAM:PF00333	PFAM:PF03719
ScanProsite:PS00585	PFscan:PS50881	PANTHER:PTHR13718	PANTHER:PTHR13718:SF79	InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_N_CS	InterPro:Ribosomal_S5_euk/arc	SUPFAM:SSF54211
SUPFAM:SSF54768	TIGRFAMs:TIGR01020	UniParc:UPI0002950AC6	SEG:seg	:	:

Description

40S ribosomal protein S2-4 [Source:GMGC_GENE;Acc:GSMUA_Achr1G22950_001]

Coordinates

chr1:-:17245269..17248067

Molecular Weight (calculated)

27725.9 Da

IEP (calculated)

11.271

GRAVY (calculated)

-0.363

Length

254 amino acids

Sequence
(BLAST)

001: MAERGAGDRG GFGRGFGRGF GRGRGDRGRG DRGRGGRRGG RRDEEEKWVP VTKLGRLHQI IDTLLGGRLK DEVMKIMPVQ KQTRAGQRTR FKAFVVVGDT
101: DGHVGLGVKC AKEVATAIRG AIILAKLSVI PVRRGYWGNK IGKPHTVPCK VTGKCGSVTV RMVPAPRGAG IVAARVPKKV LQFAGIEDVF TSSRGSTKTL
201: GNFVKATFEC LMKTYGFLTP DFWMETRFSK SPFQEYTDLL AKPTKAILIE NTES

Best Arabidopsis Sequence Match ( AT3G57490.1 )
(BLAST)

001: MAERGVERGG DRGDFGRGFG GRGGGRGGPR GRGRRAGRAP EEEKWVPVTK LGRLVKEGKI TKIEQIYLHS LPVKEYQIID LLVGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE

Arabidopsis Description

RPS2D40S ribosomal protein S2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCM3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.