Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016913.1-P | Field mustard | cytosol | 95.04 | 94.04 |
| CDY35397 | Canola | cytosol, extracellular | 100.0 | 93.07 |
| Bra004654.1-P | Field mustard | cytosol | 93.62 | 92.63 |
| Bra035439.1-P | Field mustard | cytosol | 85.82 | 86.43 |
| KRH60418 | Soybean | mitochondrion, nucleus | 81.56 | 84.56 |
| AT3G57490.1 | Thale cress | cytosol | 81.91 | 83.7 |
| KRH70352 | Soybean | endoplasmic reticulum, nucleus | 81.21 | 83.27 |
| KRH27874 | Soybean | nucleus | 81.21 | 83.27 |
| KRH27864 | Soybean | nucleus | 81.21 | 83.27 |
| PGSC0003DMT400063904 | Potato | cytosol | 81.56 | 82.14 |
| KRH41719 | Soybean | nucleus | 40.43 | 82.01 |
| Solyc04g074300.2.1 | Tomato | nucleus | 81.21 | 81.79 |
| Solyc04g063290.2.1 | Tomato | nucleus | 81.21 | 81.79 |
| GSMUA_Achr1P22950_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 73.4 | 81.5 |
| Os07t0207400-01 | Rice | cytosol, golgi, nucleus, plasma membrane | 47.52 | 81.21 |
| Os03t0807800-01 | Rice | nucleus | 78.37 | 80.66 |
| PGSC0003DMT400079142 | Potato | cytosol | 73.76 | 80.31 |
| VIT_08s0007g08370.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 77.66 | 80.22 |
| EER93243 | Sorghum | cytosol | 77.66 | 79.93 |
| EER93242 | Sorghum | cytosol | 77.66 | 79.93 |
| Zm00001d034550_P001 | Maize | plasma membrane, plastid | 77.31 | 79.56 |
| Zm00001d013034_P001 | Maize | plastid | 77.31 | 79.56 |
| TraesCS5B01G468500.1 | Wheat | plastid | 76.95 | 79.2 |
| TraesCS5A01G458900.1 | Wheat | cytosol | 76.6 | 78.55 |
| Zm00001d019147_P001 | Maize | plasma membrane, plastid | 77.31 | 78.14 |
| GSMUA_AchrUn_... | Banana | cytosol | 59.93 | 77.88 |
| EER96052 | Sorghum | cytosol | 76.95 | 77.78 |
| TraesCS5D01G470000.1 | Wheat | extracellular, golgi, plastid, unclear | 76.95 | 77.78 |
| GSMUA_Achr1P12890_001 | Banana | cytosol | 60.28 | 77.63 |
| TraesCS3A01G366100.1 | Wheat | golgi | 76.24 | 77.34 |
| GSMUA_Achr2P07800_001 | Banana | cytosol | 60.28 | 76.92 |
| HORVU3Hr1G086050.1 | Barley | cytosol | 75.53 | 76.62 |
| TraesCS3B01G376600.1 | Wheat | nucleus | 75.53 | 76.62 |
| TraesCS3D01G338200.1 | Wheat | cytosol | 75.53 | 76.62 |
| HORVU5Hr1G109910.2 | Barley | cytosol | 68.09 | 63.37 |
| GSMUA_Achr8P31470_001 | Banana | cytosol | 32.62 | 59.74 |
| OQU76471 | Sorghum | cytosol | 43.26 | 55.71 |
| PGSC0003DMT400013052 | Potato | cytosol | 21.28 | 55.56 |
| Bra027857.1-P | Field mustard | cytosol, mitochondrion, nucleus | 10.99 | 48.44 |
| OQU90562 | Sorghum | cytosol, plastid | 28.01 | 40.93 |
Protein Annotations
| MapMan:17.1.3.1.2 | Gene3D:3.30.160.770 | Gene3D:3.30.230.10 | EnsemblPlantsGene:Bra000242 | EnsemblPlants:Bra000242.1 | EnsemblPlants:Bra000242.1-P |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015935 | GO:GO:0019538 |
| GO:GO:0030529 | InterPro:IPR013810 | InterPro:IPR014721 | UniProt:M4C7R4 | PFAM:PF00333 | PFAM:PF03719 |
| ScanProsite:PS00585 | PFscan:PS50881 | PANTHER:PTHR13718 | PANTHER:PTHR13718:SF79 | InterPro:Ribosomal_S5 | InterPro:Ribosomal_S5_C |
| InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Ribosomal_S5_D2-typ_fold_subgr | InterPro:Ribosomal_S5_N | InterPro:Ribosomal_S5_N_CS | InterPro:Ribosomal_S5_euk/arc | SUPFAM:SSF54211 |
| SUPFAM:SSF54768 | TIGRFAMs:TIGR01020 | UniParc:UPI00025403AA | SEG:seg | : | : |
Description
AT1G58380 (E=6e-121) XW6 | XW6; structural constituent of ribosome
Coordinates
chrA03:-:10107064..10108492
Molecular Weight (calculated)
30493.1 Da
IEP (calculated)
10.832
GRAVY (calculated)
-0.434
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERGGERGA ERGGDRGGFG RGFGGRAGGR GGPRGRGGRR GGRPTEEEKW TPVTKLGRLV QSGKIQKLEQ IYLHSLPVKE YQIIDLLVGP TLKDEVMKIM
101: PVQKQTRAGQ RTRFKAFVVV GDTNGHVGLG VKCSKEVATA IRGGIILAKL SVIPVRRGYW GNKIGKPHTV PCKVTGKCGS VTVRMVPAPR GAGIVAARVP
201: KKVLQFAGID DVFTSSRGST KTLGNFVKAT FDCLQKTYGF LTPEFWKETS FKKSPYQEYT DLLAEKGTPT TKAITEAEDQ AS
101: PVQKQTRAGQ RTRFKAFVVV GDTNGHVGLG VKCSKEVATA IRGGIILAKL SVIPVRRGYW GNKIGKPHTV PCKVTGKCGS VTVRMVPAPR GAGIVAARVP
201: KKVLQFAGID DVFTSSRGST KTLGNFVKAT FDCLQKTYGF LTPEFWKETS FKKSPYQEYT DLLAEKGTPT TKAITEAEDQ AS
001: MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA
Arabidopsis Description
RPS2B40S ribosomal protein S2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VB8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.