Factsheet for Bra035439.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra036286.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	Bra036286.1-P	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44553	Canola	cytosol	100.0	100.0
AT1G58684.1	Thale cress	cytosol	88.21	86.97
AT1G58983.1	Thale cress	cytosol	88.21	86.97
AT1G59359.1	Thale cress	cytosol	88.21	86.97
Bra016913.1-P	Field mustard	cytosol	87.5	85.96
Bra000242.1-P	Field mustard	cytosol	86.43	85.82
AT1G58380.1	Thale cress	cytosol	86.79	85.56
KRH60418	Soybean	mitochondrion, nucleus	81.07	83.46
Os07t0207400-01	Rice	cytosol, golgi, nucleus, plasma membrane	48.93	83.03
Bra004654.1-P	Field mustard	cytosol	84.29	82.81
KRH41719	Soybean	nucleus	40.71	82.01
KRH27864	Soybean	nucleus	80.0	81.45
KRH27874	Soybean	nucleus	80.0	81.45
KRH70352	Soybean	endoplasmic reticulum, nucleus	80.0	81.45
Solyc04g074300.2.1	Tomato	nucleus	81.43	81.43
PGSC0003DMT400063904	Potato	cytosol	81.07	81.07
Solyc04g063290.2.1	Tomato	nucleus	80.71	80.71
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	78.57	80.59
AT2G41840.1	Thale cress	cytosol	81.43	80.0
PGSC0003DMT400079142	Potato	cytosol	73.57	79.54
GSMUA_Achr1P22950_001	Banana	cytosol, endoplasmic reticulum, nucleus	71.79	79.13
Os03t0807800-01	Rice	nucleus	77.14	78.83
Zm00001d019147_P001	Maize	plasma membrane, plastid	78.21	78.49
TraesCS3A01G366100.1	Wheat	golgi	77.86	78.42
EER96052	Sorghum	cytosol	77.5	77.78
EER93243	Sorghum	cytosol	76.07	77.74
EER93242	Sorghum	cytosol	76.07	77.74
Zm00001d013034_P001	Maize	plastid	76.07	77.74
HORVU3Hr1G086050.1	Barley	cytosol	77.14	77.7
Zm00001d034550_P001	Maize	plasma membrane, plastid	75.71	77.37
TraesCS5B01G468500.1	Wheat	plastid	75.71	77.37
TraesCS3B01G376600.1	Wheat	nucleus	76.79	77.34
TraesCS3D01G338200.1	Wheat	cytosol	76.79	77.34
GSMUA_AchrUn_...	Banana	cytosol	59.64	76.96
TraesCS5A01G458900.1	Wheat	cytosol	75.36	76.73
TraesCS5D01G470000.1	Wheat	extracellular, golgi, plastid, unclear	75.71	75.99
GSMUA_Achr2P07800_001	Banana	cytosol	59.29	75.11
GSMUA_Achr1P12890_001	Banana	cytosol	58.57	74.89
HORVU5Hr1G109910.2	Barley	cytosol	68.21	63.04
Bra027857.1-P	Field mustard	cytosol, mitochondrion, nucleus	13.21	57.81
GSMUA_Achr8P31470_001	Banana	cytosol	31.79	57.79
OQU76471	Sorghum	cytosol	44.29	56.62
PGSC0003DMT400013052	Potato	cytosol	21.79	56.48
OQU90562	Sorghum	cytosol, plastid	28.21	40.93

Protein Annotations

MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	EnsemblPlantsGene:Bra035439	EnsemblPlants:Bra035439.1	EnsemblPlants:Bra035439.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538
GO:GO:0030529	InterPro:IPR013810	InterPro:IPR014721	UniProt:M4F2Y9	PFAM:PF00333	PFAM:PF03719
ScanProsite:PS00585	PFscan:PS50881	PANTHER:PTHR13718	PANTHER:PTHR13718:SF79	InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_N_CS	InterPro:Ribosomal_S5_euk/arc	SUPFAM:SSF54211
SUPFAM:SSF54768	TIGRFAMs:TIGR01020	UniParc:UPI00025448D7	SEG:seg	:	:

Description

AT1G58380 (E=7e-124) XW6 | XW6; structural constituent of ribosome

Coordinates

chrA01:-:16243562..16244805

Molecular Weight (calculated)

30382.9 Da

IEP (calculated)

10.831

GRAVY (calculated)

-0.414

Length

280 amino acids

Sequence
(BLAST)

001: MAERGGERGA ERGGDRGGFG RGFGGRGGGR GGPRGRGRRA GRPTEEEKWT PVTKLGRLVR DGKIKQLEQI YLHSLPVKEY QIIDLLVGPS LKDEVMKIMP
101: VQKQTRAGQR TRFKAFVVVG DGNGHVGLGV KCSKEVATAI RGGIILAKLS VVPVRRGYWG NKIGKPHTVP CKVTGKCGSV TVRMVPAPRG AGIVAARVPK
201: KVLQFAGIDD VFTSSRGSTK TLGNFVKATF DCLQKTYGFL TPEFWKETSF KKSPYQEYTD FLTTKADSAA KVITEVEDQA

Best Arabidopsis Sequence Match ( AT1G58983.1 )
(BLAST)

001: MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA

Arabidopsis Description

RPS2B40S ribosomal protein S2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.