Factsheet for Bra036286.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027857.1-P
Bra035439.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02220.1	Bra027857.1-P	AT1G58684.1	21798944
AT4G02220.1	Bra035439.1-P	AT1G58684.1	21798944
AT4G02220.1	Bra027857.1-P	AT1G58983.1	21798944
AT4G02220.1	Bra035439.1-P	AT1G58983.1	21798944
AT4G02220.1	Bra027857.1-P	AT1G59359.1	21798944
AT4G02220.1	Bra035439.1-P	AT1G59359.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22038	Canola	nucleus	99.28	99.28
CDY52785	Canola	nucleus	94.46	94.0
AT4G02220.1	Thale cress	nucleus	83.61	83.01
Solyc08g076440.2.1	Tomato	nucleus	46.99	56.52
VIT_07s0005g00910.t01	Wine grape	nucleus	54.7	54.44
KRH37677	Soybean	nucleus	52.53	53.69
EER92397	Sorghum	nucleus	53.49	53.49
Os03t0300200-01	Rice	nucleus	52.53	52.03
PGSC0003DMT400038341	Potato	nucleus	52.77	51.65
TraesCS2D01G317600.1	Wheat	nucleus	52.05	51.55
TraesCS1B01G115400.1	Wheat	nucleus	52.29	51.54
TraesCS4D01G189400.1	Wheat	nucleus	51.81	51.31
TraesCS4B01G188000.1	Wheat	nucleus	51.81	51.07
HORVU4Hr1G054890.2	Barley	nucleus	53.01	50.0
KRH24906	Soybean	nucleus	47.71	49.38
TraesCS4A01G116200.2	Wheat	nucleus	52.53	48.44
GSMUA_Achr3P07500_001	Banana	plastid	13.25	47.83
HORVU5Hr1G011430.1	Barley	cytosol	22.41	45.15
Os01t0578200-00	Rice	cytosol, nucleus	17.35	45.0
TraesCS5D01G058500.1	Wheat	nucleus	40.48	40.38
TraesCS7B01G451300.1	Wheat	nucleus	34.94	39.4
TraesCS7D01G521500.1	Wheat	nucleus	27.47	39.04
KRG89015	Soybean	nucleus	9.4	39.0
TraesCS7A01G534200.1	Wheat	nucleus	38.07	38.35
HORVU5Hr1G045730.3	Barley	nucleus	27.71	37.7
OQU91410	Sorghum	nucleus	41.2	37.25
Zm00001d035481_P001	Maize	nucleus	13.98	35.37

Protein Annotations

Gene3D:3.30.60.180	MapMan:35.2	EnsemblPlantsGene:Bra036286	EnsemblPlants:Bra036286.1	EnsemblPlants:Bra036286.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0046872
InterPro:IPR002893	UniProt:M4F5D0	InterPro:PDCD2_C	PFAM:PF01753	PFAM:PF04194	ScanProsite:PS01360
PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF26	SUPFAM:SSF144232	UniParc:UPI0002541F9E	InterPro:Znf_MYND
SEG:seg	:	:	:	:	:

Description

AT4G02220 (E=5e-209) | zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein

Coordinates

chrA09:-:314785..317142

Molecular Weight (calculated)

47217.2 Da

IEP (calculated)

4.439

GRAVY (calculated)

-0.591

Length

415 amino acids

Sequence
(BLAST)

001: MSSFNGDDFK GLRITQLDDD DEEQAPVEPI NVDEFDDDDD DDEDDEEEPV ILGFVESPKF PWSSLRQLFP NLAGGVPAWL DPVNLPSGKS ILCDLCEEPL
101: QFVLQLYAPL TDKESAFHRT LFLFMCPSMS CLLRDQHEQW KRAPEKPMRS VKVFRCQLPR VNPFYSSEAP KHDGKDKPLG PGAPLCTWCG TWKGDKVCGG
201: CKTARYCSPK HQALHWHRAH KIECQQLRTV LETSDSVNNG VSLTQVQKAA SKSLWKEFVL INEDESEYDT EMSETDEVAQ PMVVSKREVD EQMKSVMKDF
301: EGDADKNSWV NFQQRVDKAP EQVVRYCRSS EAKPLWPMAS GRVSKSEVPN CKSCGGPRCF EFQAMPQLLF FFGGSNERES LDWATIVVYT CENSCDSSLS
401: YNEEFVWVQV YSQTT

Best Arabidopsis Sequence Match ( AT4G02220.1 )
(BLAST)

001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT

Arabidopsis Description

Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.