Factsheet for TraesCS4A01G116200.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G366100.1
TraesCS3B01G376600.1
TraesCS3D01G338200.1
TraesCS5A01G458900.1
TraesCS5B01G468500.1
TraesCS5D01G470000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02220.1	TraesCS3A01G366100.1	AT1G58684.1	21798944
AT4G02220.1	TraesCS3B01G376600.1	AT1G58684.1	21798944
AT4G02220.1	TraesCS3D01G338200.1	AT1G58684.1	21798944
AT4G02220.1	TraesCS5A01G458900.1	AT1G58684.1	21798944
AT4G02220.1	TraesCS5B01G468500.1	AT1G58684.1	21798944
AT4G02220.1	TraesCS5D01G470000.1	AT1G58684.1	21798944
AT4G02220.1	TraesCS3A01G366100.1	AT1G58983.1	21798944
AT4G02220.1	TraesCS3B01G376600.1	AT1G58983.1	21798944
AT4G02220.1	TraesCS3D01G338200.1	AT1G58983.1	21798944
AT4G02220.1	TraesCS5A01G458900.1	AT1G58983.1	21798944
AT4G02220.1	TraesCS5B01G468500.1	AT1G58983.1	21798944
AT4G02220.1	TraesCS5D01G470000.1	AT1G58983.1	21798944
AT4G02220.1	TraesCS3A01G366100.1	AT1G59359.1	21798944
AT4G02220.1	TraesCS3B01G376600.1	AT1G59359.1	21798944
AT4G02220.1	TraesCS3D01G338200.1	AT1G59359.1	21798944
AT4G02220.1	TraesCS5A01G458900.1	AT1G59359.1	21798944
AT4G02220.1	TraesCS5B01G468500.1	AT1G59359.1	21798944
AT4G02220.1	TraesCS5D01G470000.1	AT1G59359.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G115400.1	Wheat	nucleus	86.67	92.64
TraesCS2D01G317600.1	Wheat	nucleus	86.22	92.6
TraesCS4D01G189400.1	Wheat	nucleus	85.78	92.12
TraesCS4B01G188000.1	Wheat	nucleus	84.89	90.74
HORVU4Hr1G054890.2	Barley	nucleus	83.56	85.45
Os03t0300200-01	Rice	nucleus	72.89	78.28
EER92397	Sorghum	nucleus	70.22	76.14
Zm00001d031819_P001	Maize	cytosol, nucleus, plastid	31.11	74.47
Zm00001d028812_P010	Maize	nucleus	60.44	65.38
Zm00001d047689_P002	Maize	nucleus	68.67	62.93
Solyc08g076440.2.1	Tomato	nucleus	43.56	56.81
KRH37677	Soybean	nucleus	48.0	53.2
AT4G02220.1	Thale cress	nucleus	48.89	52.63
CDY22038	Canola	nucleus	48.44	52.53
Bra036286.1-P	Field mustard	nucleus	48.44	52.53
CDY52785	Canola	nucleus	48.67	52.52
VIT_07s0005g00910.t01	Wine grape	nucleus	47.33	51.08
PGSC0003DMT400038341	Potato	nucleus	47.56	50.47
KRH24906	Soybean	nucleus	43.56	48.88
GSMUA_Achr6P05130_001	Banana	mitochondrion, nucleus	56.22	48.01
TraesCS7A01G534200.1	Wheat	nucleus	41.56	45.39
KRG89015	Soybean	nucleus	9.78	44.0
Zm00001d004890_P001	Maize	cytosol	35.56	41.88
Zm00001d040569_P002	Maize	cytosol	30.44	38.16

Protein Annotations

EnsemblPlants:TraesCS4A01G116200.2	EnsemblPlantsGene:TraesCS4A01G116200	Gene3D:3.30.60.180	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	InterPro:IPR002893	InterPro:PDCD2_C	InterPro:Znf_MYND	PANTHER:PTHR12298	PANTHER:PTHR12298:SF26
PFAM:PF01753	PFAM:PF04194	PFscan:PS50865	ScanProsite:PS01360	SEG:seg	SUPFAM:SSF144232
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:141109498..141113024

Molecular Weight (calculated)

50653.5 Da

IEP (calculated)

5.435

GRAVY (calculated)

-0.520

Length

450 amino acids

Sequence
(BLAST)

001: MFEPLIFDLW YFGHFLNPAR KAARIPPHPS LSAAGKLMEP NADKLRGLRI TSLDDEDDDE IELPATVAAA ASGYDDDDED EDEEAEVMLG FLEKPKHPGL
101: LRHLFPSKAG GIPAWLDPVN LPSGNSSCCG FCGEPLHFVL QIYAPIESNA AAFHRTLFMF MCPSMACLHR DQHEQWTRNQ GNPRRSVRVF RCQLPRTNVF
201: YSSKPPSHNN SDKPLCAGGT ALCHWCGTWK GDKICGGCKK SRYCSEKHQA LHWRSGHKND CLQIINSSEA SSSVLPAVGK VPARTSWPEY QIAIDDEVDL
301: DSDGCDENSS KSLVMQKHGK PDDTMQSWMD QFEADADNQC WAYFQERISR APEQVLRYCR DPNVKPLWAL SAGRPSNPDI PSCSYCKGPL CYEFQIMPQL
401: LYYFGVRNEP DSLDWATIVV YTCKGSCDQS TSYKEEFAWV QLYPTSISRP

Best Arabidopsis Sequence Match ( AT4G02220.1 )
(BLAST)

001: MSSFNGDSMD DFKGLRITQL DDDDDDETAV EPINMDEFDD DDEEDDEDYE PVMLGFVESP KFAWSNLRQL FPNLAGGVPA WLDPVNLPSG KSILCDLCEE
101: PMQFVLQLYA PLTDKESAFH RTLFLFMCPS MSCLLRDQHE QWKRAPEKAM RSTKVFRCQL PRANPFYSSE APKHDGTDKP LGHGAPLCTW CGTWKGDKLC
201: SGCKNARYCS PKHQALHWRL GHKTECQQLR TVSETSDSGP VNNGVAPTEK QKVASKSLWK EFVLINEDES EYDTEMSGDD EVAKPLVSKR EVDDQMKSLM
301: NDFEGDADKK NWVNFQQRVD KAPEQVLRYS RSSGAKPLWP IASGRVSKSE LPSCKSCGGP RCFEFQVMPQ LLFFFGGKNE RESLDWATIV VYTCENSCDS
401: SLSYKEEFVW VQLYSQTT

Arabidopsis Description

Putative zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q93VB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.