Factsheet for TraesCS3B01G376600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G115400.1
TraesCS2D01G317600.1
TraesCS4A01G116200.2
TraesCS4B01G188000.1
TraesCS4D01G189400.1
TraesCS5D01G058500.1
TraesCS7A01G534200.1
TraesCS7B01G451300.1
TraesCS7D01G521500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	TraesCS1B01G115400.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS2D01G317600.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS4A01G116200.2	AT4G02220.1	21798944
AT2G41840.1	TraesCS4B01G188000.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS4D01G189400.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS5D01G058500.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS7A01G534200.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS7B01G451300.1	AT4G02220.1	21798944
AT2G41840.1	TraesCS7D01G521500.1	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G338200.1	Wheat	cytosol	99.64	99.64
TraesCS3A01G366100.1	Wheat	golgi	98.56	98.56
HORVU3Hr1G086050.1	Barley	cytosol	97.12	97.12
TraesCS5B01G468500.1	Wheat	plastid	94.96	96.35
Os03t0807800-01	Rice	nucleus	89.93	91.24
GSMUA_Achr1P22950_001	Banana	cytosol, endoplasmic reticulum, nucleus	74.46	81.5
KRH41719	Soybean	nucleus	40.65	81.3
KRH60418	Soybean	mitochondrion, nucleus	79.5	81.25
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	79.5	80.95
KRH27864	Soybean	nucleus	79.86	80.73
KRH27874	Soybean	nucleus	79.86	80.73
KRH70352	Soybean	endoplasmic reticulum, nucleus	79.86	80.73
GSMUA_AchrUn_...	Banana	cytosol	61.15	78.34
AT3G57490.1	Thale cress	cytosol	77.7	78.26
Solyc04g063290.2.1	Tomato	nucleus	78.78	78.21
PGSC0003DMT400063904	Potato	cytosol	78.42	77.86
GSMUA_Achr2P07800_001	Banana	cytosol	61.87	77.83
GSMUA_Achr1P12890_001	Banana	cytosol	61.15	77.63
Solyc04g074300.2.1	Tomato	nucleus	78.06	77.5
PGSC0003DMT400079142	Potato	cytosol	71.58	76.83
Bra035439.1-P	Field mustard	cytosol	77.34	76.79
AT2G41840.1	Thale cress	cytosol	78.42	76.49
Bra004654.1-P	Field mustard	cytosol	77.7	75.79
Bra016913.1-P	Field mustard	cytosol	77.7	75.79
Bra000242.1-P	Field mustard	cytosol	76.62	75.53
AT1G59359.1	Thale cress	cytosol	76.26	74.65
AT1G58983.1	Thale cress	cytosol	76.26	74.65
AT1G58684.1	Thale cress	cytosol	76.26	74.65
AT1G58380.1	Thale cress	cytosol	75.18	73.59
GSMUA_Achr8P31470_001	Banana	cytosol	34.53	62.34
PGSC0003DMT400013052	Potato	cytosol	23.02	59.26
Bra027857.1-P	Field mustard	cytosol, mitochondrion, nucleus	8.27	35.94

Protein Annotations

MapMan:17.1.3.1.2	Gene3D:3.30.160.770	Gene3D:3.30.230.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	InterPro:IPR013810	InterPro:IPR014721	PFAM:PF00333
PFAM:PF03719	ScanProsite:PS00585	PFscan:PS50881	PANTHER:PTHR13718	PANTHER:PTHR13718:SF74	InterPro:Ribosomal_S5
InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S5_N	InterPro:Ribosomal_S5_N_CS	InterPro:Ribosomal_S5_euk/arc
SUPFAM:SSF54211	SUPFAM:SSF54768	TIGRFAMs:TIGR01020	EnsemblPlantsGene:TraesCS3B01G376600	EnsemblPlants:TraesCS3B01G376600.1	SEG:seg

Description

No Description!

Coordinates

chr3B:+:592860200..592862444

Molecular Weight (calculated)

30357.1 Da

IEP (calculated)

10.873

GRAVY (calculated)

-0.383

Length

278 amino acids

Sequence
(BLAST)

001: MADRGGERGG DRGGERGGFG RGFGRGGRGD RGGRRGGRRG PRQEEEKWVP VTKLGRLVKE GRFTKMEELY LHSLPIKEHQ IVEQLCPGLK DEVMKITPVQ
101: KQTRAGQRTR FKAFVVVGDS NGHVGLGVKC AKEVATAIRG AIILAKLSIV PVRRGYWGNK IGLPHTVPCK VTGKCGSVTV RMVPAPRGSG IVAARVPKKV
201: LQFAGIDDVF TSSRGSTKTL GNFVKATFDC LMKTYGFLTP DFWRETTFTK APYQEFTDIL AKPTKALMLD APAEKIEA

Best Arabidopsis Sequence Match ( AT2G41840.1 )
(BLAST)

001: MAERGGERGV ERGGERGDFG RGFGGRGGRG DRGGRGRGGR GGRRGGRASE EEKWVPVTKL GRLVAAGHIK QIEQIYLHSL PVKEYQIIDM LIGPTLKDEV
101: MKIMPVQKQT RAGQRTRFKA FVVVGDGNGH VGLGVKCSKE VATAIRGAII LAKLSVVPVR RGYWGNKIGK PHTVPCKVTG KCGSVTVRMV PAPRGSGIVA
201: ARVPKKVLQF AGIDDVFTSS RGSTKTLGNF VKATFDCLQK TYGFLTPEFW KETRFSRSPY QEHTDFLASK ALSTSKPDPV VEDQA

Arabidopsis Description

RPS2C40S ribosomal protein S2-3 [Source:UniProtKB/Swiss-Prot;Acc:P49688]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.