Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400038341 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G41840.1 | PGSC0003DMT400038341 | AT4G02220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400063904 | Potato | cytosol | 99.23 | 91.79 |
| Solyc04g074300.2.1 | Tomato | nucleus | 98.84 | 91.43 |
| GSMUA_AchrUn_... | Banana | cytosol | 69.5 | 82.95 |
| GSMUA_Achr1P12890_001 | Banana | cytosol | 69.88 | 82.65 |
| GSMUA_Achr2P07800_001 | Banana | cytosol | 70.27 | 82.35 |
| KRH60418 | Soybean | mitochondrion, nucleus | 83.78 | 79.78 |
| KRH70352 | Soybean | endoplasmic reticulum, nucleus | 84.17 | 79.27 |
| KRH27874 | Soybean | nucleus | 84.17 | 79.27 |
| KRH27864 | Soybean | nucleus | 84.17 | 79.27 |
| VIT_08s0007g08370.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 83.01 | 78.75 |
| CDY45881 | Canola | cytosol | 81.47 | 76.45 |
| GSMUA_Achr1P22950_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 74.9 | 76.38 |
| PGSC0003DMT400013052 | Potato | cytosol | 31.66 | 75.93 |
| CDY06903 | Canola | cytosol | 74.9 | 75.78 |
| Os03t0807800-01 | Rice | nucleus | 78.76 | 74.45 |
| AT3G57490.1 | Thale cress | cytosol | 79.15 | 74.28 |
| Bra000242.1-P | Field mustard | cytosol | 80.31 | 73.76 |
| Zm00001d013034_P001 | Maize | plastid | 77.99 | 73.72 |
| CDY44553 | Canola | cytosol | 79.54 | 73.57 |
| Bra035439.1-P | Field mustard | cytosol | 79.54 | 73.57 |
| CDY22542 | Canola | cytosol | 79.92 | 73.4 |
| EER93242 | Sorghum | cytosol | 77.61 | 73.36 |
| EER93243 | Sorghum | cytosol | 77.61 | 73.36 |
| Zm00001d034550_P001 | Maize | plasma membrane, plastid | 77.61 | 73.36 |
| Os07t0207400-01 | Rice | cytosol, golgi, nucleus, plasma membrane | 46.72 | 73.33 |
| AT2G41840.1 | Thale cress | cytosol | 80.69 | 73.33 |
| CDY42063 | Canola | mitochondrion | 27.41 | 73.2 |
| TraesCS5A01G458900.1 | Wheat | cytosol | 77.61 | 73.09 |
| TraesCS5B01G468500.1 | Wheat | plastid | 77.22 | 72.99 |
| CDX79908 | Canola | cytosol | 80.31 | 72.98 |
| Bra004654.1-P | Field mustard | cytosol | 80.31 | 72.98 |
| CDY14790 | Canola | cytosol | 79.54 | 72.28 |
| Bra016913.1-P | Field mustard | cytosol | 79.54 | 72.28 |
| TraesCS5D01G470000.1 | Wheat | extracellular, golgi, plastid, unclear | 77.22 | 71.68 |
| TraesCS3B01G376600.1 | Wheat | nucleus | 76.83 | 71.58 |
| TraesCS3A01G366100.1 | Wheat | golgi | 76.83 | 71.58 |
| AT1G58380.1 | Thale cress | cytosol | 78.38 | 71.48 |
| Zm00001d019147_P001 | Maize | plasma membrane, plastid | 76.83 | 71.33 |
| TraesCS3D01G338200.1 | Wheat | cytosol | 76.45 | 71.22 |
| HORVU3Hr1G086050.1 | Barley | cytosol | 76.45 | 71.22 |
| AT1G58684.1 | Thale cress | cytosol | 77.99 | 71.13 |
| AT1G59359.1 | Thale cress | cytosol | 77.99 | 71.13 |
| AT1G58983.1 | Thale cress | cytosol | 77.99 | 71.13 |
| EER96052 | Sorghum | cytosol | 76.45 | 70.97 |
| KRH41719 | Soybean | nucleus | 37.07 | 69.06 |
| CDY35397 | Canola | cytosol, extracellular | 80.31 | 68.65 |
| GSMUA_Achr8P31470_001 | Banana | cytosol | 38.22 | 64.29 |
| HORVU5Hr1G109910.2 | Barley | cytosol | 67.57 | 57.76 |
| OQU76471 | Sorghum | cytosol | 42.86 | 50.68 |
| CDY65554 | Canola | cytosol | 9.65 | 46.3 |
| OQU90562 | Sorghum | cytosol, plastid | 28.96 | 38.86 |
| Bra027857.1-P | Field mustard | cytosol, mitochondrion, nucleus | 8.88 | 35.94 |
Protein Annotations
| Gene3D:3.30.160.770 | Gene3D:3.30.230.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR013810 | InterPro:IPR014721 | UniProt:M1D1B2 |
| PFAM:PF00333 | PFAM:PF03719 | EnsemblPlantsGene:PGSC0003DMG400030802 | PGSC:PGSC0003DMG400030802 | EnsemblPlants:PGSC0003DMT400079142 | ScanProsite:PS00585 |
| PFscan:PS50881 | PANTHER:PTHR13718 | PANTHER:PTHR13718:SF79 | InterPro:Ribosomal_S5 | InterPro:Ribosomal_S5_C | InterPro:Ribosomal_S5_D2-typ_fold |
| InterPro:Ribosomal_S5_D2-typ_fold_subgr | InterPro:Ribosomal_S5_N | InterPro:Ribosomal_S5_N_CS | SUPFAM:SSF54211 | SUPFAM:SSF54768 | UniParc:UPI0002950410 |
| SEG:seg | : | : | : | : | : |
Description
40S ribosomal protein S2 [Source:PGSC_GENE;Acc:PGSC0003DMG400030802]
Coordinates
chr4:+:63767273..63768951
Molecular Weight (calculated)
28171.4 Da
IEP (calculated)
10.847
GRAVY (calculated)
-0.300
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERGGGERG GFGRGFGGRG GRGGDRGGRG RGGRRPRRET EEEKWVPVTK LGRLVKDGKI KSLEQIYLHS LPIKEFQIID TLIGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFVVVGDGNG HVGLGVKCSK EVATAIRGGI ILAKLSVIPG KCGSVTVRMV PAPRGAGIVA ARVPKKVLQF AGIEDVFTSS RGSTKTLGNF
201: VKATFDCLMK TYGFLTPDFW KETRFTKSPF QEYFDILAKP ANKVIVYATE EAAPERVEA
101: TRAGQRTRFK AFVVVGDGNG HVGLGVKCSK EVATAIRGGI ILAKLSVIPG KCGSVTVRMV PAPRGAGIVA ARVPKKVLQF AGIEDVFTSS RGSTKTLGNF
201: VKATFDCLMK TYGFLTPDFW KETRFTKSPF QEYFDILAKP ANKVIVYATE EAAPERVEA
001: MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA
Arabidopsis Description
RPS2B40S ribosomal protein S2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VB8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.