CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY22038
CDY52785

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	CDY22038	AT4G02220.1	21798944
AT2G41840.1	CDY52785	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65554	Canola	cytosol	45.36	81.48
KRH41719	Soybean	nucleus	75.26	52.52
PGSC0003DMT400013052	Potato	cytosol	54.64	49.07
CDY42822	Canola	mitochondrion	45.36	46.32
CDX99877	Canola	mitochondrion, plastid	44.33	42.16
CDY06903	Canola	cytosol	90.72	34.38
CDY45881	Canola	cytosol	88.66	31.16
CDY14790	Canola	cytosol	90.72	30.88
CDY44553	Canola	cytosol	88.66	30.71
CDY22542	Canola	cytosol	88.66	30.5
AT1G58684.1	Thale cress	cytosol	84.54	28.87
AT1G59359.1	Thale cress	cytosol	84.54	28.87
AT1G58983.1	Thale cress	cytosol	84.54	28.87
AT1G58380.1	Thale cress	cytosol	84.54	28.87
KRH60418	Soybean	mitochondrion, nucleus	79.38	28.31
CDX79908	Canola	cytosol	81.44	27.72
KRH27864	Soybean	nucleus	78.35	27.64
KRH27874	Soybean	nucleus	78.35	27.64
KRH70352	Soybean	endoplasmic reticulum, nucleus	78.35	27.64
PGSC0003DMT400079142	Potato	cytosol	73.2	27.41
CDY35397	Canola	cytosol, extracellular	84.54	27.06
CDX82895	Canola	extracellular	44.33	26.54
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	73.2	26.01
AT2G41840.1	Thale cress	cytosol	76.29	25.96
PGSC0003DMT400063904	Potato	cytosol	73.2	25.36
Solyc04g063290.2.1	Tomato	nucleus	73.2	25.36
Solyc04g074300.2.1	Tomato	nucleus	73.2	25.36

Protein Annotations

Gene3D:3.30.230.10	MapMan:35.1	GO:A0A078HZC0	UniProt:A0A078HZC0	EnsemblPlants:CDY42063	ProteinID:CDY42063
ProteinID:CDY42063.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00074099001	InterPro:IPR014721	PFAM:PF03719
PANTHER:PTHR13718	PANTHER:PTHR13718:SF79	InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
SUPFAM:SSF54211	UniParc:UPI0004EF02E2	:	:	:	:

Description

BnaC09g15240DBnaC09g15240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZC0]

Coordinates

chrLK032513:-:276453..277301

Molecular Weight (calculated)

10753.9 Da

IEP (calculated)

9.134

GRAVY (calculated)

-0.222

Length

97 amino acids

Sequence
(BLAST)

1: MVPAPRGAGI VAARVPKKVL KFAGIDDVFT SSRGSTKTLG NFVKATFDCL QKTYGFLTPE CWKETRFQKS PYQEYTDLLA IKLDYAAKAI TEVEDQA

Best Arabidopsis Sequence Match ( AT1G58380.1 )
(BLAST)

001: MAERGGEGGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA

Arabidopsis Description

RPS2AAt1g59359 [Source:UniProtKB/TrEMBL;Acc:G1JSI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.