CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99877	Canola	mitochondrion, plastid	86.32	80.39
CDY42063	Canola	mitochondrion	46.32	45.36
CDX82895	Canola	extracellular	51.58	30.25
CDY06903	Canola	cytosol	50.53	18.75
CDY45881	Canola	cytosol	51.58	17.75
OQU90562	Sorghum	cytosol, plastid	35.79	17.62
CDY22542	Canola	cytosol	51.58	17.38
CDX79908	Canola	cytosol	51.58	17.19
CDY44553	Canola	cytosol	50.53	17.14
CDY14790	Canola	cytosol	50.53	16.84
CDY35397	Canola	cytosol, extracellular	50.53	15.84
CDY65554	Canola	cytosol	7.37	12.96

Protein Annotations

Gene3D:3.30.230.10	MapMan:35.1	GO:A0A078HY67	UniProt:A0A078HY67	EnsemblPlants:CDY42822	ProteinID:CDY42822
ProteinID:CDY42822.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00075504001	InterPro:IPR014721	PFAM:PF03719
PANTHER:PTHR13718	PANTHER:PTHR13718:SF74	InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
SUPFAM:SSF54211	UniParc:UPI0004EE5D46	:	:	:	:

Description

BnaC03g23840DBnaC03g23840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HY67]

Coordinates

chrLK032535:+:210908..212351

Molecular Weight (calculated)

10002.2 Da

IEP (calculated)

10.371

GRAVY (calculated)

0.425

Length

95 amino acids

Sequence
(BLAST)

1: MVPAPRGAGI VAARVPKMVL QFAGIDDVFT SSRGSTKTLG NFVKLKQNGW VGNFALGASY ISLPWWAGQA LFGTEAAKWI CVSAIDVTQL SVAGM

Best Arabidopsis Sequence Match ( AT1G58684.1 )
(BLAST)

001: MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA

Arabidopsis Description

RPS2B40S ribosomal protein S2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.