CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42822	Canola	mitochondrion	80.39	86.32
CDY42063	Canola	mitochondrion	42.16	44.33
CDX82895	Canola	extracellular	49.02	30.86
CDY06903	Canola	cytosol	46.08	18.36
CDY45881	Canola	cytosol	47.06	17.39
CDX79908	Canola	cytosol	48.04	17.19
OQU90562	Sorghum	cytosol, plastid	32.35	17.1
CDY44553	Canola	cytosol	46.08	16.79
CDY22542	Canola	cytosol	46.08	16.67
CDY14790	Canola	cytosol	46.08	16.49
CDY35397	Canola	cytosol, extracellular	47.06	15.84
CDY65554	Canola	cytosol	6.86	12.96

Protein Annotations

Gene3D:3.30.230.10	MapMan:35.1	GO:A0A078EFM4	EnsemblPlants:CDX99877	ProteinID:CDX99877	ProteinID:CDX99877.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00108621001	InterPro:IPR014721	PFAM:PF03719	PANTHER:PTHR13718
PANTHER:PTHR13718:SF74	InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SUPFAM:SSF54211
TMHMM:TMhelix	UniParc:UPI0004EDEA2F	:	:	:	:

Description

BnaC05g22990D

Coordinates

chrLK031914:+:829218..830462

Molecular Weight (calculated)

10936.4 Da

IEP (calculated)

10.237

GRAVY (calculated)

0.467

Length

102 amino acids

Sequence
(BLAST)

001: MVPAPRGAGI VAARVPKMVL QFNGIDDVFT SSRGSTKTLG NFVKLKQNGW VGNFALGASY ISLPWWAGQA LFGTDAAKWI CVSAIDVTQL SVAVYLVIKI
101: YT

Best Arabidopsis Sequence Match ( AT1G58684.1 )
(BLAST)

001: MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA

Arabidopsis Description

RPS2B40S ribosomal protein S2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.