CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92397
OQU91410

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41840.1	EER92397	AT4G02220.1	21798944
AT2G41840.1	OQU91410	AT4G02220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU76471	Sorghum	cytosol	52.33	46.12
CDY42822	Canola	mitochondrion	17.62	35.79
KRH41719	Soybean	nucleus	25.39	35.25
CDX99877	Canola	mitochondrion, plastid	17.1	32.35
EER96052	Sorghum	cytosol	46.11	31.9
EER93243	Sorghum	cytosol	45.08	31.75
EER93242	Sorghum	cytosol	45.08	31.75
KRH70352	Soybean	endoplasmic reticulum, nucleus	42.49	29.82
KRH27874	Soybean	nucleus	42.49	29.82
KRH27864	Soybean	nucleus	42.49	29.82
KRH60418	Soybean	mitochondrion, nucleus	41.97	29.78
VIT_08s0007g08370.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	41.45	29.3
PGSC0003DMT400079142	Potato	cytosol	38.86	28.96
AT1G59359.1	Thale cress	cytosol	42.49	28.87
AT1G58380.1	Thale cress	cytosol	42.49	28.87
AT1G58684.1	Thale cress	cytosol	42.49	28.87
AT1G58983.1	Thale cress	cytosol	42.49	28.87
AT3G57490.1	Thale cress	cytosol	40.93	28.62
AT2G41840.1	Thale cress	cytosol	41.97	28.42
Bra004654.1-P	Field mustard	cytosol	41.97	28.42
PGSC0003DMT400063904	Potato	cytosol	40.93	28.21
Solyc04g063290.2.1	Tomato	nucleus	40.93	28.21
Solyc04g074300.2.1	Tomato	nucleus	40.93	28.21
Bra035439.1-P	Field mustard	cytosol	40.93	28.21
Bra016913.1-P	Field mustard	cytosol	41.45	28.07
Bra000242.1-P	Field mustard	cytosol	40.93	28.01
PGSC0003DMT400013052	Potato	cytosol	15.54	27.78
CDX82895	Canola	extracellular	22.28	26.54
Bra027857.1-P	Field mustard	cytosol, mitochondrion, nucleus	1.04	3.12

Protein Annotations

Gene3D:3.30.160.770	Gene3D:3.30.230.10	MapMan:35.2	UniProt:A0A1W0W852	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR014721	EnsemblPlants:OQU90562	ProteinID:OQU90562	ProteinID:OQU90562.1	PFAM:PF03719	PANTHER:PTHR13718
PANTHER:PTHR13718:SF74	InterPro:Ribosomal_S5	InterPro:Ribosomal_S5_C	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	EnsemblPlantsGene:SORBI_3002G430800
SUPFAM:SSF54211	UniParc:UPI0009DC917F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:77655600..77656793

Molecular Weight (calculated)

20336.4 Da

IEP (calculated)

11.694

GRAVY (calculated)

-0.412

Length

193 amino acids

Sequence
(BLAST)

001: STPPPSQTLR AAAAPQHTAP NAPHLHLLPV KEHQIVEQLV PGLKDEVMKI TPVQRTRFKA FVVVGEAMDT SGSASSAPRR SLRPSVAPSS SPSSRSCLSG
101: CPSGGGTGGT NRTAPHRALQ GHRQVRLRHR AHGAGAQGGS GIVAAYVPKK VLQFAGIEDV FTSSRRFTKT LGNFVKVRNL EHKIKGEGTC SGT

Best Arabidopsis Sequence Match ( AT1G58380.1 )
(BLAST)

001: MAERGGEGGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA

Arabidopsis Description

RPS2AAt1g59359 [Source:UniProtKB/TrEMBL;Acc:G1JSI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.