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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
 nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc08g076440.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G41840.1 Solyc08g076440.2.1 AT4G02220.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc04g063290.2.1 Tomato nucleus 99.29 99.29
PGSC0003DMT400079142 Potato cytosol 91.43 98.84
KRH60418 Soybean mitochondrion, nucleus 85.71 88.24
KRH70352 Soybean endoplasmic reticulum, nucleus 86.07 87.64
KRH27874 Soybean nucleus 86.07 87.64
KRH27864 Soybean nucleus 86.07 87.64
VIT_08s0007g08370.t01 Wine grape cytosol, endoplasmic reticulum, nucleus 84.29 86.45
Os07t0207400-01 Rice cytosol, golgi, nucleus, plasma membrane 50.71 86.06
GSMUA_Achr1P22950_001 Banana cytosol, endoplasmic reticulum, nucleus 77.14 85.04
CDY06903 Canola cytosol 76.79 83.98
GSMUA_AchrUn_... Banana cytosol 65.0 83.87
GSMUA_Achr1P12890_001 Banana cytosol 65.36 83.56
GSMUA_Achr2P07800_001 Banana cytosol 65.71 83.26
CDY45881 Canola cytosol 81.79 82.97
KRH41719 Soybean nucleus 41.07 82.73
AT3G57490.1 Thale cress cytosol 80.71 81.88
CDY44553 Canola cytosol 81.43 81.43
Bra035439.1-P Field mustard cytosol 81.43 81.43
Bra000242.1-P Field mustard cytosol 81.79 81.21
Os03t0807800-01 Rice nucleus 79.29 81.02
CDY22542 Canola cytosol 81.43 80.85
CDX79908 Canola cytosol 81.79 80.35
TraesCS5B01G468500.1 Wheat plastid 78.57 80.29
Zm00001d013034_P001 Maize plastid 78.57 80.29
Bra004654.1-P Field mustard cytosol 81.43 80.0
EER93243 Sorghum cytosol 78.21 79.93
EER93242 Sorghum cytosol 78.21 79.93
Zm00001d034550_P001 Maize plasma membrane, plastid 78.21 79.93
CDY14790 Canola cytosol 81.07 79.65
Bra016913.1-P Field mustard cytosol 81.07 79.65
AT2G41840.1 Thale cress cytosol 81.07 79.65
TraesCS5A01G458900.1 Wheat cytosol 78.21 79.64
AT1G58380.1 Thale cress cytosol 80.0 78.87
TraesCS5D01G470000.1 Wheat extracellular, golgi, plastid, unclear 78.57 78.85
AT1G58684.1 Thale cress cytosol 79.64 78.52
AT1G58983.1 Thale cress cytosol 79.64 78.52
AT1G59359.1 Thale cress cytosol 79.64 78.52
TraesCS3B01G376600.1 Wheat nucleus 77.5 78.06
TraesCS3A01G366100.1 Wheat golgi 77.5 78.06
Zm00001d019147_P001 Maize plasma membrane, plastid 77.5 77.78
HORVU3Hr1G086050.1 Barley cytosol 77.14 77.7
TraesCS3D01G338200.1 Wheat cytosol 77.14 77.7
EER96052 Sorghum cytosol 77.14 77.42
PGSC0003DMT400013052 Potato cytosol 29.29 75.93
CDY35397 Canola cytosol, extracellular 81.79 75.58
CDY42063 Canola mitochondrion 25.36 73.2
GSMUA_Achr8P31470_001 Banana cytosol 35.71 64.94
HORVU5Hr1G109910.2 Barley cytosol 69.64 64.36
OQU76471 Sorghum cytosol 43.93 56.16
CDY65554 Canola cytosol 8.93 46.3
OQU90562 Sorghum cytosol, plastid 28.21 40.93
Bra027857.1-P Field mustard cytosol, mitochondrion, nucleus 8.21 35.94
Protein Annotations
MapMan:17.1.3.1.2Gene3D:3.30.160.770Gene3D:3.30.230.10GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003735GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0015935GO:GO:0019538GO:GO:0022627GO:GO:0030529
InterPro:IPR013810InterPro:IPR014721UniProt:K4BTW8PFAM:PF00333PFAM:PF03719ScanProsite:PS00585
PFscan:PS50881PANTHER:PTHR13718PANTHER:PTHR13718:SF79InterPro:Ribosomal_S5InterPro:Ribosomal_S5_CInterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgrInterPro:Ribosomal_S5_NInterPro:Ribosomal_S5_N_CSInterPro:Ribosomal_S5_euk/arcSUPFAM:SSF54211SUPFAM:SSF54768
EnsemblPlantsGene:Solyc04g074300.2EnsemblPlants:Solyc04g074300.2.1TIGRFAMs:TIGR01020UniParc:UPI000276562FSEG:seg:
Description
No Description!
Coordinates
chr4:+:60300815..60302963
Molecular Weight (calculated)
30578.4 Da
IEP (calculated)
10.967
GRAVY (calculated)
-0.328
Length
280 amino acids
Sequence
(BLAST)
001: MAERGAGDRG GFGRGFGGRG GRGGDRGGRG RGGRRPRRET EEEKWVPVTK LGRLVKDGKI RSLEQIYLHS LPIKEFQIID TLIGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFVVVGDGNG HVGLGVKCSK EVATAIRGGI ILAKLSVIPV RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGAGIV AARVPKKVLQ
201: FAGIEDVFTS SRGSTKTLGN FVKATFDCLM KTYGFLTPDF WKETRFTKSP FQEYFDILAK PANKVIVYAT EEAAPERVEA
Best Arabidopsis Sequence Match ( AT1G58983.1 )
(BLAST)
001: MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA
Arabidopsis Description
RPS2B40S ribosomal protein S2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VB8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.